PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000616.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 18848.6 Da PI: 9.9677 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k F++ L +H +H Itr_sc000616.1_g00015.1 40 FECKTCQKKFKSFQALGSHRASH 62 89*****************9998 PP | |||||||
2 | zf-C2H2 | 10.6 | 0.0018 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F L H+r+H Itr_sc000616.1_g00015.1 81 HECPVCGLEFGLGQALGGHMRKH 103 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.45 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.087 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.16E-6 | 40 | 103 | No hit | No description |
Pfam | PF13912 | 2.8E-9 | 40 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.2E-10 | 80 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.432 | 81 | 113 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MTLKRSREEV AAEAEALAMA NCLVLLSRPA EKTPPSGWEF ECKTCQKKFK SFQALGSHRA 60 SHKRPKHLEH NNNNVNIKKR HECPVCGLEF GLGQALGGHM RKHRDQLHSD HKKSPDLLTV 120 MTVKNEEHSA GIKKKNEGWF DLNFTLLGND STVHRRFVPT TLDLFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019159845.1 | 1e-78 | PREDICTED: zinc finger protein ZAT8-like | ||||
Swissprot | Q42410 | 3e-25 | ZAT12_ARATH; Zinc finger protein ZAT12 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 2e-26 | C2H2 family protein |