PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000591.1_g00013.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 895aa MW: 101045 Da PI: 6.8351

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000591.1_g00013.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.2	7.2e-15	74	148	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 k+Y++YA++ GFs+ + + ++ k +g i++ +f Cs+e +++++ ++ C+a l+++++++++w vtk++++Hn Itr_sc000591.1_g00013.1 74 KYYDAYARHGGFSTHVGQYSRAKPDGPIISWDFSCSREVFKRKNVES--------------CNAVLRIERKNTENWIVTKFVEDHN 145 69*************************************999877..............*********************** PP FAR1 87 Hel 89 H++ Itr_sc000591.1_g00013.1 146 HSV 148 *86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-12	74	148	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-29	313	405	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.041	590	626	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.9E-10	599	624	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-8	601	628	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence Send to blast
MDGEVIGVKG NQRPKDGEAN IERKKDGKRN RETHAEHKDG KQNLLGYSTA EESSNEVEKP 60 FVGMVFESEE AARKYYDAYA RHGGFSTHVG QYSRAKPDGP IISWDFSCSR EVFKRKNVES 120 CNAVLRIERK NTENWIVTKF VEDHNHSVAG PSKVHYLRPR RHFAGASKNV VEIPDSQADA 180 MVSMDGNHVS CNTNQGVHNA VSTKGVPIAM ATNQCAQIAA NTNQVLQNAF SLEPNHITRT 240 ISPVTPVNFI QPCSRRRALG RYAQNLLDYF KKMQAENPGF YYAIQLDEDN RMTNVFWADA 300 RSRVAYSHFG DAVIFDTMYR PNQFQVPVAP FTGVNHHGQV VSFGCALLFD ESESSFTWLF 360 QTWLSAMNNC APVSITTDQD RAIKAAINQV LPGTRHCICK WHILREGQER LTHVYMAYPS 420 FHGELYSCIN YSETIEDFES SWTSLLDKFD VHNNEWLQAV YNARQQWAPV YFRDTFFAVL 480 SSKHGVSSFF DGYVNQQTTL PDFFKQYERA LENSLEREIE ADFDTICTAP MLKTPSPMEQ 540 QAANLYTRKV FTKFQEELVE TFVYTANKID GDEVLSKFRV AKYEHDDKAF IVELNFAETK 600 ASCSCQMFEY SGILCRHILT VFTVTNVLTV PSHYILKRWT RNAKSILGSD EQDAVAHAID 660 SLTSRFNNLC QDALKYAEEG AVAVETYDAA SSALREGSRK IAIMKKHVAK VRPPTALASG 720 NLNDDSNKKT PSTTSDTGWP WQDAMPYNIN LNDVGVPIGD LNQPTMTSVA INRDASFADN 780 TVVYTCFKSM TWMIESKNPA NKVAVINLKL QDYGKSPAGE TEVQFRLTRV TLEPMLKSMA 840 YINQQLSMPA NRVAVINLKL QDTKTTSGET EVKFQVSRDA LGSMLRSMAY IHEQL

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence Send to blast

MDGEVIGVKG NQRPKDGEAN IERKKDGKRN RETHAEHKDG KQNLLGYSTA EESSNEVEKP  60
FVGMVFESEE AARKYYDAYA RHGGFSTHVG QYSRAKPDGP IISWDFSCSR EVFKRKNVES  120
CNAVLRIERK NTENWIVTKF VEDHNHSVAG PSKVHYLRPR RHFAGASKNV VEIPDSQADA  180
MVSMDGNHVS CNTNQGVHNA VSTKGVPIAM ATNQCAQIAA NTNQVLQNAF SLEPNHITRT  240
ISPVTPVNFI QPCSRRRALG RYAQNLLDYF KKMQAENPGF YYAIQLDEDN RMTNVFWADA  300
RSRVAYSHFG DAVIFDTMYR PNQFQVPVAP FTGVNHHGQV VSFGCALLFD ESESSFTWLF  360
QTWLSAMNNC APVSITTDQD RAIKAAINQV LPGTRHCICK WHILREGQER LTHVYMAYPS  420
FHGELYSCIN YSETIEDFES SWTSLLDKFD VHNNEWLQAV YNARQQWAPV YFRDTFFAVL  480
SSKHGVSSFF DGYVNQQTTL PDFFKQYERA LENSLEREIE ADFDTICTAP MLKTPSPMEQ  540
QAANLYTRKV FTKFQEELVE TFVYTANKID GDEVLSKFRV AKYEHDDKAF IVELNFAETK  600
ASCSCQMFEY SGILCRHILT VFTVTNVLTV PSHYILKRWT RNAKSILGSD EQDAVAHAID  660
SLTSRFNNLC QDALKYAEEG AVAVETYDAA SSALREGSRK IAIMKKHVAK VRPPTALASG  720
NLNDDSNKKT PSTTSDTGWP WQDAMPYNIN LNDVGVPIGD LNQPTMTSVA INRDASFADN  780
TVVYTCFKSM TWMIESKNPA NKVAVINLKL QDYGKSPAGE TEVQFRLTRV TLEPMLKSMA  840
YINQQLSMPA NRVAVINLKL QDTKTTSGET EVKFQVSRDA LGSMLRSMAY IHEQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157600.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1S4BG32	0.0	A0A1S4BG32_TOBAC; protein FAR1-RELATED SEQUENCE 3-like
STRING	XP_009616992.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]