PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000582.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 175aa MW: 19613.4 Da PI: 9.9441 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.5 | 1.3e-16 | 20 | 55 | 1 | 36 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaeva 36 +rien+ r+vtfskR+ g++KKA E+S+LC+ +v Itr_sc000582.1_g00011.1 20 SRIENDAHRTVTFSKRLIGLFKKAIEISTLCGYNVN 55 59******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-12 | 12 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.068 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.87E-18 | 13 | 57 | No hit | No description |
SuperFamily | SSF55455 | 9.16E-16 | 13 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-10 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-14 | 21 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-10 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MSSNNNTRRV HRGRQKIPLS RIENDAHRTV TFSKRLIGLF KKAIEISTLC GYNVNAVLDK 60 YVAESENRTT EANVTKELLR SQKDADIRLA NHQINVLEAA IQQEMKVNEA LTEAVKGMPS 120 ISNLPLAELL SMKRQMEILR SNVFQILNPQ PTMPVQTQAL TTQSDDVNPS GATPF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185048.1 | 3e-81 | PREDICTED: MADS-box transcription factor 23-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 6e-15 | AGAMOUS-like 61 |