PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000582.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 186aa    MW: 20989.1 Da    PI: 9.4697
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000582.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.51.5e-222070150
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeys 50
                             +rien++ r v fskRr g++KKA+E+S+LC++e+++++fs++  k+y++ 
  Itr_sc000582.1_g00010.1 20 SRIENDTHRIVAFSKRRYGLFKKASEISTLCGVEILLVVFSPNkEKVYTFG 70
                             59***************************************8626899995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-261272IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.811273IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-251389IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-141434IPR002100Transcription factor, MADS-box
PfamPF003198.7E-222169IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-143449IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-144970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSSNNNTRRV YRGRQRIPLS RIENDTHRIV AFSKRRYGLF KKASEISTLC GVEILLVVFS  60
PNKEKVYTFG SPNVNAVLDK YVAENENRTI EGNVTEELLL SQKEADIRLM NLQINVLEAA  120
IQHEMKVSQA LTEVAKGMPS ISNLPLADLL SMKRQMEILR SNVFQILNPQ PQTQSDDVNP  180
SGATPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185048.14e-90PREDICTED: MADS-box transcription factor 23-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-29AGAMOUS-like 61