PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000573.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 304aa    MW: 33817.6 Da    PI: 9.6423
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000573.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.2e-07650244
                             SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                               WT +E+  +  a   +  g   +Wk+Ia+ ++ g+++k++ +++
  Itr_sc000573.1_g00004.1  6 ATWTWDEERMFQIALSTYVEGtrnRWKKIAELIP-GKSAKDVEEYY 50
                             57***************9999999**********.*******9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.609150IPR017877Myb-like domain
SMARTSM007172.0E-6456IPR001005SANT/Myb domain
PfamPF002493.9E-6650IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-8754IPR009057Homeodomain-like
CDDcd001674.49E-7750No hitNo description
Gene3DG3DSA:1.10.10.607.3E-6859IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MANQRATWTW DEERMFQIAL STYVEGTRNR WKKIAELIPG KSAKDVEEYY PILKANIEAM  60
ESSFTQLQTN TNNAPSSSQQ RGENEEVGSV WDLDELVSCS QGVQCKVNLG PWYNLPVLIP  120
WTAVHNALWT KGTAVARKGG SFIRLFSLIK TMLFCPLDHN ACSGEPGSPA SSPPSRRPPS  180
AARDSKSRRL LELEEQRRRR LKEKRRSMSP PPGTSSAAAI FLQARRRPSS AACNSMLRCH  240
LGQHCPLPST EVAGALTITK GTGELSGESK IVTCDFSYSK GLFLKTFAMA TLEAFAFRVL  300
YTFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.16e-10Homeodomain-like transcriptional regulator