PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000569.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family EIL
Protein Properties Length: 663aa    MW: 74350.7 Da    PI: 5.0559
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000569.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3486.51.6e-148534272354
                              XXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvega 87 
                              el++rmw+d++ll+rlker+k+    ke   + +k++ s+eqarrkkmsraQDgiLkYMlk+mevcnaqGfvYgiipekgkpv+ga
  Itr_sc000569.1_g00006.1  53 ELERRMWRDRVLLRRLKERNKS----KEG-DDGAKQRPSQEQARRKKMSRAQDGILKYMLKMMEVCNAQGFVYGIIPEKGKPVSGA 133
                              9********************8....555.344589************************************************** PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH- CS
                     EIN3  88 sdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWW 173
                              sd+LraWWkekv+fdrngpaai+ yqa+n+i+++ +++++ + s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWW
  Itr_sc000569.1_g00006.1 134 SDNLRAWWKEKVRFDRNGPAAIARYQAENNIPGKIEDSSSVAVSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWW 219
                              **********************************9999999********************************************* PP

                              --S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S-- CS
                     EIN3 174 PtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecat 259
                              PtG+e+wwgel+l+kdq +ppykkphdlkkawkv+vLtavikhmsp+i++i +l+rqsk+lqdkm+akes+++l+++nqee+++++
  Itr_sc000569.1_g00006.1 220 PTGNEEWWGELSLPKDQVPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKICKLVRQSKCLQDKMTAKESATWLAIINQEEALARK 305
                              ************************************************************************************** PP

                              XXXXXX.......XXXXXXXXXXXXXXXXXXXX..XXXXXX.XXXXXXXXXX......................XXXXXXXXXXXX CS
                     EIN3 260 vsahss.......slrkqspkvtlsceqkedve..gkkeskikhvqavktta......................gfpvvrkrkkkp 314
                              ++++s        s+  ++  + + + ++++ve   ++e++i +v   k ++                      + ++  krk+  
  Itr_sc000569.1_g00006.1 306 MYPDSYpnypkcsSSALGNGLYLITDPSDYNVEgvDEEEENI-EVVDYKPRNinclnlvvgapkvqikeeildiTSHFLGKRKQAA 390
                              ****44457777555559999999*********633333333.4445555558********************99999****9655 PP

                              XXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
                     EIN3 315 sesakvsskevsrtcqssqfrgsetelifadknsisqney 354
                              +e+ +  + ++++tc+  ++++s++ ++f+d+ns++++++
  Itr_sc000569.1_g00006.1 391 VEDPA--D-KMIYTCEYPKCPYSNYLMGFNDRNSRNNHQI 427
                              55544..3.367**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.2E-12853300No hitNo description
Gene3DG3DSA:1.10.3180.101.5E-74174309IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.92E-61179303IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MGMFDEMVFC GNLEFQSEPP GIEEMGAEVE AKIAGEGDDD DDGCSDEDVD VHELERRMWR  60
DRVLLRRLKE RNKSKEGDDG AKQRPSQEQA RRKKMSRAQD GILKYMLKMM EVCNAQGFVY  120
GIIPEKGKPV SGASDNLRAW WKEKVRFDRN GPAAIARYQA ENNIPGKIED SSSVAVSTPH  180
TLQELQDTTL GSLLSALMQH CDPPQRRFPL EKGVSPPWWP TGNEEWWGEL SLPKDQVPPP  240
YKKPHDLKKA WKVGVLTAVI KHMSPDIAKI CKLVRQSKCL QDKMTAKESA TWLAIINQEE  300
ALARKMYPDS YPNYPKCSSS ALGNGLYLIT DPSDYNVEGV DEEEENIEVV DYKPRNINCL  360
NLVVGAPKVQ IKEEILDITS HFLGKRKQAA VEDPADKMIY TCEYPKCPYS NYLMGFNDRN  420
SRNNHQIICP FRLNSCPNLG TLNYQMNNSK QAVYSSAAPM APKTTGASAI SSSSMDVSSL  480
GLPEDDERAI SELFSFYDNN LQQNGGFNSG NLNGVEDHQN LLQHTAQLQV DDYFSPAGGG  540
MFQPQANTPV THSVLPSTEA QYDQSKPQFE SAFNRNSSDI DDFKFGSSCN LVDYSMDQLP  600
KQDGSTWFIP FLWSIGSDHL VTKYPFNFNF IIIVRFSPYH VTLAGKGLQG GRALLPLELS  660
LQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-791773101134Protein ETHYLENE INSENSITIVE 3
4zds_B2e-791773101134Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161674.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ9SLH00.0EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBLA0A1I9VYJ50.0A0A1I9VYJ5_IPOBA; EIL1
STRINGXP_009759370.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30423178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.11e-171ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  3. Zhang GB,Yi HY,Gong JM
    The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation.
    Plant Cell, 2014. 26(10): p. 3984-98
    [PMID:25326291]
  4. Wang J, et al.
    Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation.
    J Integr Plant Biol, 2015. 57(8): p. 708-21
    [PMID:25494721]
  5. Qing D, et al.
    Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis.
    Mol Plant, 2016. 9(1): p. 158-174
    [PMID:26476206]
  6. Poulios S,Vlachonasios KE
    Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(3): p. 905-18
    [PMID:26596766]
  7. Shen X,Li Y,Pan Y,Zhong S
    Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence.
    Front Plant Sci, 2016. 7: p. 1571
    [PMID:27822221]
  8. Abozeid A, et al.
    Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 253
    [PMID:28286514]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  10. Harkey AF, et al.
    Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.
    Plant Physiol., 2018. 176(3): p. 2095-2118
    [PMID:29259106]