PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000564.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 463aa    MW: 51090.6 Da    PI: 5.6996
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000564.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.5e-174690147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             r rWT+eE++++v+a k++G   W++I +++g ++t  q++s+ qk+
  Itr_sc000564.1_g00003.1 46 RERWTEEEHQRFVEALKLYGRA-WRKIEEHVG-TKTVIQIRSHAQKF 90
                             78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-164094IPR009057Homeodomain-like
PROSITE profilePS5129419.2614195IPR017930Myb domain
TIGRFAMsTIGR015572.5E-174493IPR006447Myb domain, plants
SMARTSM007179.0E-134593IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-84586IPR009057Homeodomain-like
PfamPF002492.6E-134689IPR001005SANT/Myb domain
CDDcd001676.37E-104891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVAEAMDQSD GNSGAVSSAV KAGVSSSLGS EYLPKVRKPY TITKQRERWT EEEHQRFVEA  60
LKLYGRAWRK IEEHVGTKTV IQIRSHAQKF FTKVGRDLGN DGDGPIEIPP PRPKKKPLHP  120
YPRKMVDSSK PEMEVLGQSE MSPSKIYNGE RDNQSPDSVL SAIGSDDMES PVAELQHTQR  180
SPASCTSDAD SPNLAPIEND NECLTSNSSV EKKGSVASVG VTAKSSLPTD NSSAKLDLLS  240
RDTLSSVKES TRDDTPASFR LFGQTVSVSI AVADSSKQEP DNFKSEPLDA AREENEVNDN  300
TTVEGLPNHV NSQFVYTMVP HSMIPPASWF PQFLPNKDSN STVGAKPTTM PPWWSWYQDL  360
MHRYFSSCSH VAAQTTYPEE DFKHSRPQRE RSSTDSSSGS ASEVNSVLRN SDAIESKGST  420
VKLENTQNRK GFVPYKKCLV ERNEESSAAD IEEPERKKLC VGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175517.10.0PREDICTED: protein CCA1-like isoform X1
TrEMBLA0A314KU971e-115A0A314KU97_NICAT; Protein reveille 7
STRINGXP_009768903.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74472127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-42MYB_related family protein