PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000563.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 369aa    MW: 40130.6 Da    PI: 8.5466
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000563.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA602.9e-19260293134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Itr_sc000563.1_g00003.1 260 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 293
                              *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.2E-18254304IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.424258290IPR000679Zinc finger, GATA-type
CDDcd002022.10E-16259306No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14259291IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.18E-15259317No hitNo description
PfamPF003204.1E-17260293IPR000679Zinc finger, GATA-type
PROSITE patternPS003440260285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGMVEQAAYW DGIAGGGDDY DYDNVMDFLN GVDFLPEGLE GLEGDSAFID DFDASKLGPI  60
PSDALMGLLP VPQNNFSSAA LKLKPSAMPE LALPFSGEAK PPGVLSPPMK SAVFSHSSRK  120
EKSQSVDSVS QCTQLQNDVD ENSSKTLLAQ NKYSAAQEAA MFQTQSPVSV LESSASCSGG  180
KAVPVKTGIA VPVRTRTKRT RPSTNPWLSA SLISSAFDRK TSAAKRRRER KLLQKSIAVK  240
EARYTNGRAN DALDAFVKRC THCEVTKTPQ WREGPMGPKT LCNACGVRYR SGRLFPEYRP  300
AASPTFTPSL HSNSHRKVVE MRRKAVQGEG IVENSCKKVS EMAFTAMNDP PMSPLPEFVP  360
MSNYLFDCI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198RTRTKR
2218231RKTSAAKRRRERKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178239.11e-178PREDICTED: GATA transcription factor 11-like
STRINGXP_009795845.12e-77(Nicotiana sylvestris)
STRINGPGSC0003DMT4000208765e-77(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-40GATA transcription factor 11