PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000556.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 258aa MW: 29448.9 Da PI: 7.0826 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.7 | 3.9e-28 | 91 | 178 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn+YA++vGF +r+sk ++s+++g+ + r +vC+keg+r ++++ k r+raetr+gC+a++ v+k ++gkw vtk+++eH+H Itr_sc000556.1_g00013.1 91 FYNAYATRVGFIIRVSKLSRSRKDGSAIGRALVCNKEGFRMADRRE--KVVRQRAETRVGCRAMILVRKVSSGKWIVTKFVKEHTH 174 ******************************************9988..999*********************************** PP FAR1 88 elap 91 +l+p Itr_sc000556.1_g00013.1 175 PLTP 178 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-25 | 91 | 178 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MVPRVDFEID GDLNGEVVGS SVIEVRADAE NAIEGSPDEH DFHQAPNVKV DHDLSGRDVV 60 SIEEPETVSN SAPDEPYVGQ EFESEAAAHA FYNAYATRVG FIIRVSKLSR SRKDGSAIGR 120 ALVCNKEGFR MADRREKVVR QRAETRVGCR AMILVRKVSS GKWIVTKFVK EHTHPLTPGK 180 GRRESIYDQF PNEHDKIREL SQQLAAEKKR SATYKRHLEM IFEHIEEHNQ SLSKKIQDIV 240 NNVREMESRD QQNQQNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165863.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A484MTQ3 | 1e-142 | A0A484MTQ3_9ASTE; Uncharacterized protein | ||||
STRING | XP_009605656.1 | 1e-139 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11568 | 23 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 6e-97 | FAR1 family protein |