PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000549.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 802aa    MW: 88103.4 Da    PI: 9.3833
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000549.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.7e-08703752147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Itr_sc000549.1_g00010.1 703 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 752
                              678999********************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.72E-6487586IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.383698757IPR017930Myb domain
SMARTSM007175.3E-8702755IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-10703753IPR009057Homeodomain-like
CDDcd116604.25E-17704754No hitNo description
SuperFamilySSF466891.11E-15704785IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MDHGCRSTGY SHVVLVVTTS AAQQVSTGFV ESSTWRDGET RWRKSEGRPL AENRSSGALI  60
LNVPQIMNTP HGIINVKVLG GSVGCCSRVF LNDMVFQKRL DYGFDGYQVP PIPRSTRSSR  120
KRGSNWRKAD VNHVCAFDLL ATVAGNLLLE GENSPHSASA SSARERLVMK YCIKEEKQNE  180
EQTMQEKPCD QGSSERGFFL SELVSQAPML SNCSSELPLA QNDTLSAPAS VITTSDCSEK  240
FVTMEHLVNG GNKLELGSLN RKADLDVSGC KVFSNRKLGF EFGKPGSKGL VNDNKAGICL  300
SGFPVLGNRK PSTLVCSDDS VKLTPPKDHI SCVSFPVKRD DVKLGSRDDD ENSSGCTQPS  360
TASKVFRQAQ PYIEDRKSGK LSAPKYLEVN PKSNDEEHLN ADVETRHAFD NSKNSFKHQR  420
SLKDYPFKKR KLYDCSSVSI SDVGIRNDGI CSRYNGDASS YTLTLPSAHP VAGTSSSAAG  480
ESASFRSGDS QVKLRIKSFR IPELFIEIPE TATVGSLKAR ENKNLPRTVM EAVTTILGGG  540
LRVGVLFQGK KVRDDSKTLL QTGICHDNKL NAVGFTLEPN PSQDPPPPMC PKEHPYLLSR  600
DSPQPQPQPQ PLSRYPSSPS VVHNAVQRGP NSALPNHPRG TSVINFFESD HDSAPSPPEI  660
LLNKSAAADS RALVAVPSGN AEALSMAPSR KPKRSETAQR RIRRPFSVSE VEALVQAVEK  720
LGTGRWRDVK MRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLAAH  780
AYWSQQQTKQ QMKHHSATCF LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-566897933107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421430LKDYPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199267.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLM0ZPY10.0M0ZPY1_SOLTU; Uncharacterized protein
STRINGSolyc06g005590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-141TRF-like 2