PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000539.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 308aa    MW: 35629.3 Da    PI: 4.8375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000539.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.25.9e-1851323128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratk..sgyW 83 
                               G rF+P+d el++  L+  v g  ++  + i++ d+y k ePw++  + + +ek+ yfF+k ++k++  +g+r  r++    g+W
  Itr_sc000539.1_g00013.1   5 IGDRFQPKDYELLTILLRF-VIGMGCHR-TNIRHEDLYgKKEPWEIF-RWDCNEKHQYFFTKLKRKSKtmKGSRIDRTVGkrPGTW 87 
                              588**********776655.55555555.469999999456*****5.77778999*****9988887335999999644348*** PP

                      NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              + + k k++++k +g+l g k+++ + ++ +p+ +  +W+++e+ l
  Itr_sc000539.1_g00013.1  88 HGQDKAKPIIDKkTGALLGYKRSFLYQNKLEPE-QDRQWLLKEFYL 132
                              **********9867888*******999877777.799******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.813157IPR003441NAC domain
SuperFamilySSF1019417.19E-205157IPR003441NAC domain
PfamPF023651.5E-106131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEKRIGDRFQ PKDYELLTIL LRFVIGMGCH RTNIRHEDLY GKKEPWEIFR WDCNEKHQYF  60
FTKLKRKSKT MKGSRIDRTV GKRPGTWHGQ DKAKPIIDKK TGALLGYKRS FLYQNKLEPE  120
QDRQWLLKEF YLNDAVTKTY PNVEHAKDFV LCRLRRKKRA GSDEPQEIKD VPVETILQIL  180
LQGSADSTAT AMENLPTIEE KIDTNPTEEG EILAPVLQES MQGENNNNNG SDDSYCCYIN  240
PTEEEILAPV LQEPVQPALH ESVQGENNNN GCDDDMDLMF DLDILFDDPE LLAIQQRLED  300
VGNYMGLT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179039.13e-58PREDICTED: uncharacterized protein LOC109174249
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13708311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.15e-13NAC family protein