PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000531.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family DBB
Protein Properties Length: 308aa    MW: 33872.9 Da    PI: 6.7749
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000531.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.4e-07443538
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                              C+ +++ e+ +fC  ++  lC+ C  + H+       H+
  Itr_sc000531.1_g00014.1  4 QCDVCSKDEAAFFCVADEAALCHACDHKVHHAnklaskHQ 43
                             7******99********************74446666665 PP
2zf-B_box24.94.4e-085492238
                 zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                             +++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  Itr_sc000531.1_g00014.1 54 QAPLCDICKERRAFLFCQQDRAILCRECDGPIHSAneHT 92
                             7899**************************999557765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.651147IPR000315B-box-type zinc finger
CDDcd000215.97E-6347No hitNo description
SMARTSM003362.5E-6447IPR000315B-box-type zinc finger
SMARTSM003362.8E-1353100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.28153100IPR000315B-box-type zinc finger
PfamPF006431.1E-65492IPR000315B-box-type zinc finger
CDDcd000212.28E-85688No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKIQCDVCSK DEAAFFCVAD EAALCHACDH KVHHANKLAS KHQRFTLHHP SSEQAPLCDI  60
CKERRAFLFC QQDRAILCRE CDGPIHSANE HTQKHDRFVL TGVKISATSA VYSSSPDSMS  120
ESVPSLRSQD SSSNKVVVAS PTVPAPISKT TNSYSSSNMV TPMGVAEVNV KNGGFMNGGA  180
DCLTSSLSEY LEMLPGYHVE ELLDSSYPDG LCKMGGNDVL PFWDTDLESN LSCMSSERAG  240
IWVPQASPHH HQFQHNQTQT LPSATLSFGA QIGFKEPKAS RKWADDNSFA VPQIRPSSTT  300
FKRSRNFW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174088.10.0PREDICTED: B-box zinc finger protein 21-like
TrEMBLA0A3Q7JC341e-121A0A3Q7JC34_SOLLC; Uncharacterized protein
STRINGSolyc12g089240.1.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.19e-78salt tolerance homolog2