PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000530.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

VOZ

Protein Properties

Length: 813aa MW: 90937.3 Da PI: 5.5091

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000530.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	422.5	6.8e-130	533	752	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecega 83 pppsaflgpkcalwdc+rpa gs+w+ qdycs +ha+la neg pg tp++rp gi+lkd+llf+alsak+qgk+vgipecega Itr_sc000530.1_g00002.1 533 PPPSAFLGPKCALWDCPRPAMGSDWCqksQDYCSDYHASLAPNEGFPGHTPIVRPMGIGLKDNLLFQALSAKAQGKDVGIPECEGA 618 89*********************944459*************************************************** PP VOZ 84 atakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhl 169 atakspwna+elfdl+++egetirewlffd prrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp++++ewhl Itr_sc000530.1_g00002.1 619 ATAKSPWNAPELFDLKVVEGETIREWLFFDMPRRAFESGNRKQRSLPDYNGRGWHESRKQVMNEFGGLKRSYYMDPQPMKNLEWHL 704 ********************************************************************************** PP VOZ 170 yeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 yeyein++da+alyrlelklvd+kks+kgkvs++s++dlqk+++rlta Itr_sc000530.1_g00002.1 705 YEYEINKYDACALYRLELKLVDGKKSPKGKVSTESVVDLQKQMVRLTA 752 ********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
MGSTWRSCSN SALRPRGEVH MSVATGPLLR TEGGSRFGSV GRANRRTIAT VRSPDRNPDH 60 TRKPKSHLLQ HTNYKELAKE RRRRSHRFLP LSTLPIPYFI PPSSTGTDIS PKSSQFGSLF 120 VLSCCFPLVY FQFAYWLRIE GFQMGKSSRS IAGRSATYQI FKDRAKNRVD DLQGMFTDLQ 180 SLRKESRTIE VAVLEEQLNQ MLREWKAELN EPSPASSLQG GSLGFNTSDL CRLVQLGEEE 240 DDATSALAAP KHEPDAQRVD ATGYQEKKPK ESTYSSSGGN ADDYEEINED EEEDDGVAEP 300 PDFASINAGR SSAQVLGIAV SLSAVQAEKI VVEMQNPRPP PPKPFWGHEA REREIMECDT 360 PNDDVYCAAW GAPYLRTPQL FLPLSSSTTQ QFYIRIILEF RYPYGLAVME DDGCNEGFDE 420 NWFEGLTKTV EAQVPLASIL TGDIIAWSRR HASATCDLNV TQVLQGQTFQ LVDQCKSNHI 480 GANNVGIDNM GIPAQLDYQS YEFQQEYGQQ YFPGFDGVNL CLEDALPAVH ISPPPSAFLG 540 PKCALWDCPR PAMGSDWCQK SQDYCSDYHA SLAPNEGFPG HTPIVRPMGI GLKDNLLFQA 600 LSAKAQGKDV GIPECEGAAT AKSPWNAPEL FDLKVVEGET IREWLFFDMP RRAFESGNRK 660 QRSLPDYNGR GWHESRKQVM NEFGGLKRSY YMDPQPMKNL EWHLYEYEIN KYDACALYRL 720 ELKLVDGKKS PKGKVSTESV VDLQKQMVRL TAEFPPENKR PVKGRAKANL KDGTGCIPPI 780 STNQMIPVSE GFGYPPGATY DYLIDNLSGY YLT

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

MGSTWRSCSN SALRPRGEVH MSVATGPLLR TEGGSRFGSV GRANRRTIAT VRSPDRNPDH  60
TRKPKSHLLQ HTNYKELAKE RRRRSHRFLP LSTLPIPYFI PPSSTGTDIS PKSSQFGSLF  120
VLSCCFPLVY FQFAYWLRIE GFQMGKSSRS IAGRSATYQI FKDRAKNRVD DLQGMFTDLQ  180
SLRKESRTIE VAVLEEQLNQ MLREWKAELN EPSPASSLQG GSLGFNTSDL CRLVQLGEEE  240
DDATSALAAP KHEPDAQRVD ATGYQEKKPK ESTYSSSGGN ADDYEEINED EEEDDGVAEP  300
PDFASINAGR SSAQVLGIAV SLSAVQAEKI VVEMQNPRPP PPKPFWGHEA REREIMECDT  360
PNDDVYCAAW GAPYLRTPQL FLPLSSSTTQ QFYIRIILEF RYPYGLAVME DDGCNEGFDE  420
NWFEGLTKTV EAQVPLASIL TGDIIAWSRR HASATCDLNV TQVLQGQTFQ LVDQCKSNHI  480
GANNVGIDNM GIPAQLDYQS YEFQQEYGQQ YFPGFDGVNL CLEDALPAVH ISPPPSAFLG  540
PKCALWDCPR PAMGSDWCQK SQDYCSDYHA SLAPNEGFPG HTPIVRPMGI GLKDNLLFQA  600
LSAKAQGKDV GIPECEGAAT AKSPWNAPEL FDLKVVEGET IREWLFFDMP RRAFESGNRK  660
QRSLPDYNGR GWHESRKQVM NEFGGLKRSY YMDPQPMKNL EWHLYEYEIN KYDACALYRL  720
ELKLVDGKKS PKGKVSTESV VDLQKQMVRL TAEFPPENKR PVKGRAKANL KDGTGCIPPI  780
STNQMIPVSE GFGYPPGATY DYLIDNLSGY YLT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019175769.1	0.0	PREDICTED: transcription factor VOZ1
Refseq	XP_019175773.1	0.0	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-144	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A328DJJ8	0.0	A0A328DJJ8_9ASTE; Uncharacterized protein
TrEMBL	A0A484K7T3	0.0	A0A484K7T3_9ASTE; Uncharacterized protein
STRING	XP_009776508.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2818	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-141	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]