PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000521.1_g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 161aa MW: 18441.7 Da PI: 9.0792 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.8 | 1.6e-17 | 36 | 96 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++t eql++L++l+++ r ps+ee+e+++ +l +++ ++V++WFqN+R +e++ Itr_sc000521.1_g00018.1 36 ARWKPTVEQLQILKDLYYNqmIRRPSTEEIERISLRLrqlgKIEGKNVFYWFQNQRNRERH 96 6****************975689***********************************995 PP | |||||||
2 | Wus_type_Homeobox | 87.7 | 1.2e-28 | 35 | 96 | 3 | 63 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 ++RW Pt eQ++iL++ly+ + +r P++eei+ri+ +L++ Gkie+kNVfyWFQN++ Rer+ Itr_sc000521.1_g00018.1 35 CARWKPTVEQLQILKDLYYnQMIRRPSTEEIERISLRLRQLGKIEGKNVFYWFQNQRNRERH 96 68***************9857889************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.4E-4 | 33 | 101 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-11 | 36 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.7E-15 | 36 | 96 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-7 | 37 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.40E-5 | 37 | 98 | No hit | No description |
PROSITE profile | PS50071 | 10.203 | 41 | 97 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MEGEREESIG QNHGLQQGGE ENNNNNGGCG SYNWCARWKP TVEQLQILKD LYYNQMIRRP 60 STEEIERISL RLRQLGKIEG KNVFYWFQNQ RNRERHPRKR PVTAIIAPPA LPDLHIYNNA 120 AKRSKTPPQT LSLFPMHGDG DGDGDSSVSL ELSLRPYSPK P |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019186509.1 | 1e-61 | PREDICTED: protein WUSCHEL-like | ||||
TrEMBL | A0A3P6EFL9 | 4e-27 | A0A3P6EFL9_BRAOL; Uncharacterized protein | ||||
TrEMBL | R0GAZ5 | 3e-26 | R0GAZ5_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.18351s0261.1.p | 3e-27 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7604 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17950.1 | 3e-27 | WOX family protein |