PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000492.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 288aa    MW: 31855.8 Da    PI: 8.6958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000492.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011426123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             +kC+ C +sF +   L  H+r+H
  Itr_sc000492.1_g00012.1  4 HKCKLCLRSFVNGKALGGHMRSH 26
                             79********************9 PP
2zf-C2H212.70.00037159181123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+k+F++   L  H  +H
  Itr_sc000492.1_g00012.1 159 YRCESCSKVFRSYQALGGHRASH 181
                              9***********99999998887 PP
3zf-C2H212.90.00033205227123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C ++Fs+   L  H r+H
  Itr_sc000492.1_g00012.1 205 HECPICYRVFSSGQALGGHKRSH 227
                              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.8E-8426IPR007087Zinc finger, C2H2
SMARTSM003550.11426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139124.2E-11159183IPR007087Zinc finger, C2H2
SMARTSM003550.086159181IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.3E-7159227No hitNo description
PROSITE profilePS5015710.679159186IPR007087Zinc finger, C2H2
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
PfamPF139121.3E-12205227IPR007087Zinc finger, C2H2
SMARTSM003550.19205227IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307205227IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MENHKCKLCL RSFVNGKALG GHMRSHVIAR WSSSSSSSEE YETGAGGGGS SVVVQDGESE  60
TELCRGEQVI RPKTPRFRRS KRIRKSSKIH VGEESSEIMK IQKTTSSSPP PASSISEHTH  120
TSPEEDVAYC LILLSKDKWI KGEEEEEEKL KNKKARGKYR CESCSKVFRS YQALGGHRAS  180
HKKIKSYKRI HENAGEIDNN KEKIHECPIC YRVFSSGQAL GGHKRSHFTA SARTTTIASF  240
SPLHCSASTS INGGNFIDLN LPASLEDDET ITQIELSALS DACFLTPH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161029.11e-144PREDICTED: zinc finger protein ZAT1-like
TrEMBLM1CGE94e-68M1CGE9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000669397e-69(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.14e-33C2H2-like zinc finger protein