PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000489.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 583aa    MW: 64561.8 Da    PI: 4.7363
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000489.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-18375432255
                      AP2   2 gykGVrwdkkrgrWvAeIrd.pse.ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr++  +g+WvAeIr+ +++ +    k +r++lg+f ta eAa a+++a++ ++g
  Itr_sc000489.1_g00018.1 375 TYRGVRQRI-WGKWVAEIREpVYSsDEyqsKGARIWLGTFPTAREAALAYDEAARVMYG 432
                              69****998.**********655565596455**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF032081.8E-4149186IPR004895Prenylated rab acceptor PRA1
CDDcd000181.95E-29374442No hitNo description
PfamPF008472.9E-12375432IPR001471AP2/ERF domain
SMARTSM003803.1E-33375446IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-19375442IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-29375442IPR001471AP2/ERF domain
PROSITE profilePS5103222.603375440IPR001471AP2/ERF domain
PRINTSPR003671.9E-9376387IPR001471AP2/ERF domain
PRINTSPR003671.9E-9406422IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MATPAVAPTS NRQPTTAVAA SDAIAAAFVP NPAFRTFINQ ISESVRNGLS QRRPWHELVD  60
RSAISKPESL SEATLRIRKN YAYFRTNYYV LVAAVIGLSL LSNPFTLCLL LGLLAAWLFL  120
YVFRPIDQPL VIFGRVFSDF EILACLILST IFVLFLTSVG SLLITSLLFS VAIVGAHSAF  180
RVPEDFYFEE QQAQAQAPTP ASSIISMLTG AATNAAAAPP TAVRDEDNES LAGIKRGVED  240
QNELAGVEEL YDKMLTRLDC LARLVEKSSA EVSEQENHNM KLKHKVAGLE RMSFVASQDI  300
MADGEKRKSR RRRNGSESVE EILLRWKKLN NAPVETNAAT NTINGGIKKR VKFPAKASRK  360
GCMAGKGGPE NSGCTYRGVR QRIWGKWVAE IREPVYSSDE YQSKGARIWL GTFPTAREAA  420
LAYDEAARVM YGPNAILNFP DSPALDKMSD LSNDAYAAEE SKYVCMDSAI DLESRDCYSV  480
LDSESKANPQ PLDFRSSTEC TRTDCDENEV FHDLRKGDRN IELLQTEQEE QTLDAVSERE  540
LQLQEASSLC SNTQDEEDLE AALSQLVDSD FDFSSFFSLL FSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17376440360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-17372440263ATERF1
3gcc_A1e-17372440263ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.12e-31ERF family protein