PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000489.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 507aa    MW: 58126.3 Da    PI: 4.6342
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000489.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1511.1e-461415063373
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              +lL + Aea+ + + ela+++   ++  a+  g++++R+a  +++  + +  +              +++  ++  +a+k++++v 
  Itr_sc000489.1_g00008.1 141 HLLEAYAEAMGDMQRELAKEIAGCIRRKANALGETLERVAYNVVQTSEDQGGS------------YLRREAIKNYETAFKVLYQVL 214
                              66666777777777777777777777777777777777776665544443333............3333346667778999***** PP

                     GRAS  89 PilkfshltaNqaIleav.egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              P  +f+h+ aN+aIlea+ +g+e+v iiDfd++ G+QWp+L++++a+       lR+T v+++e++  +  + e+t +rL + A+ 
  Itr_sc000489.1_g00008.1 215 PHGRFAHFSANSAILEAIpDGAEAVRIIDFDMGDGVQWPSLIESMAQT---RRALRLTSVKREEEStsHLWRFEQTTRRLYEHAKP 297
                              *****************94567************************74...567********8888878889************** PP

                     GRAS 172 lgvpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP......kvvvvveqeadhns 250
                              lgv+++++ + +++ +++ +  +   k++E la n++++l ++ ++++ ++    ++L++ k+lsP       +vv+++ e+ + s
  Itr_sc000489.1_g00008.1 298 LGVKLQIEEMsIEELVNEAKRTKKTGKRKEWLAFNCMFRLPHMTNRQQRSQA--MQFLEIAKELSPysaiqsGIVVFADGESGCWS 381
                              ********99333355556666666677***************966655555..99*****9999844444469*******99977 PP

                     GRAS 251 esFle...rflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                              +sF +    f + l +y +lf+s+e  +p +  e+ri vE  +l++++++       +    ++++++ ++   e+G++  +ls +
  Itr_sc000489.1_g00008.1 382 SSFSDyssFFNRQLVHYKSLFESMEWHFPVNLtEARIAVESLFLAPHACSDSWFHDWQ----ENKMKSISNLRAEMGLQGRKLSIE 463
                              766542216999*****************98779************987655555554....55666777777789********** PP

                     GRAS 333 aakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                              +  qak ++++ +s  yrv    e++++++l W++ pLv vS W
  Itr_sc000489.1_g00008.1 464 NILQAKEMVNERESP-YRVRieeENQHEMILEWRETPLVRVSTW 506
                              *************66.77765556689999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.338113485IPR005202Transcription factor GRAS
PfamPF035143.8E-44141506IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MMQPQIFHPS WLSYETNYST SPCTGSLSFF EDVFVTDNSY VSPVITADSS GLDSTLFHDD  60
VPEFAYLPPL LEGDVSMDDI EDVCRWLNNE ESEEGTNNTS SELTKDVLSP DFSVVSAEDY  120
SMAVLPGNGV EVDDSHWCLL HLLEAYAEAM GDMQRELAKE IAGCIRRKAN ALGETLERVA  180
YNVVQTSEDQ GGSYLRREAI KNYETAFKVL YQVLPHGRFA HFSANSAILE AIPDGAEAVR  240
IIDFDMGDGV QWPSLIESMA QTRRALRLTS VKREEESTSH LWRFEQTTRR LYEHAKPLGV  300
KLQIEEMSIE ELVNEAKRTK KTGKRKEWLA FNCMFRLPHM TNRQQRSQAM QFLEIAKELS  360
PYSAIQSGIV VFADGESGCW SSSFSDYSSF FNRQLVHYKS LFESMEWHFP VNLTEARIAV  420
ESLFLAPHAC SDSWFHDWQE NKMKSISNLR AEMGLQGRKL SIENILQAKE MVNERESPYR  480
VRIEEENQHE MILEWRETPL VRVSTWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-1615850623374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019161123.11e-178PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A314KSF51e-158A0A314KSF5_NICAT; Nodulation-signaling pathway 2 protein
STRINGPGSC0003DMT4000685071e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-22GRAS family protein