PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000461.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 26358 Da PI: 4.7716 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 61 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g Itr_sc000461.1_g00011.1 61 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALSIKG 111 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.5E-13 | 61 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-32 | 62 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-37 | 62 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-21 | 62 | 120 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.565 | 62 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 63 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.90E-30 | 63 | 121 | No hit | No description |
PRINTS | PR00367 | 1.9E-10 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MAEAETHSSE AESYANSSSS TSPNSSMQDS VLLGPSSGGV EVKTPAKWRG KRGRESGHRH 60 PVYRGVRMRS WGKWVSEIRE PRKKSRIWLG TYPTAEMAAR AHDVAALSIK GSSAILNFPH 120 LAASLPAPTS RSPRDVQAAA AKAAAMEDLN SSSSSHSSSS LSTSASSSEC ASAATLASDE 180 LGEIIELPPL EGSVDFLESN AELNVADVAA EGWVYPPWWA SDGEEFFGYF LDQEGVSLGD 240 CVFPESFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-21 | 53 | 120 | 5 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097920 | 3e-36 | BT097920.1 Soybean clone JCVI-FLGm-11H10 unknown mRNA. | |||
GenBank | FJ228453 | 3e-36 | FJ228453.1 Glycine max AP2 domain-containing transcription factor 1 (AP2-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196657.1 | 1e-121 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 1e-56 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2G9HTV6 | 3e-71 | A0A2G9HTV6_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A3Q7GXB5 | 2e-71 | A0A3Q7GXB5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g066540.1.1 | 3e-72 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 6e-47 | ERF family protein |
Publications ? help Back to Top | |||
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