PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000459.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 193aa    MW: 21880.8 Da    PI: 9.0601
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000459.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.21.3e-1186109225
                  G2-like   2 prlrWtpeLHerFveaveqLGGse 25 
                               rlrWt+eLH++Fv+av++LGG++
  Itr_sc000459.1_g00007.1  86 RRLRWTSELHRCFVHAVRRLGGQD 109
                              69********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-982110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MMKEQKSSSQ VSQTEIPEIK SKEEEEEDSK EGKKSGKRSD NNGVVVSISS SNNSTVEGAN  60
EDVGKKTTNS SSSAGDVRPY KRSTVRRLRW TSELHRCFVH AVRRLGGQDS XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXQRVN FEISSTETRT HDLPSEGGHY  180
MPLKHKVLGY EPT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2637482e-46AB263748.2 Ipomoea trifida DNA, self-incompatibility (S-) locus region, haplotype:S1.
GenBankAH0137502e-46AH013750.2 Ipomoea trifida haplotype S1 putative disease resistance protein gene, partial cds; hypothetical protein, putative zinc finger protein, putative tnp2 transposase, putative transposase En/Spm, putative 50S ribosomal protein L9, hypothetical protein, putative CDK regulatory subunit, putative copia-like polyprotein, putative PHD zinc finger protein, putative glycosyltransferase, hypothetical protein, putative RelA/SpoT protein, hypothetical protein, putative defensin protein, hypothetical protein, putative phosphatidylcholine-sterol acyltransferase, putative dihydroflavonol reductase, putative non-phototropic hypocotyl 3-like protein, putative adapitin protein, putative DNA repair protein, putative serine/arginine (SR) protein kinase protein, putative vacuolar assembling protein, hypothetical protein, putative serine carboxipeptidase, hypothetical protein, putative endonuclease III protein, hypothetical protein, prephenate dehydratase, putative pentatricopeptide repeat-containing protein, putative tRNA isopentenylpyrophosphatase, hypothetical protein, putative histone deacetylase, and putative neutral invertase genes, complete cds; and putative protein kinase gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158288.17e-27PREDICTED: uncharacterized protein LOC109155001
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1615022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.12e-11G2-like family protein