PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000449.1_g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 111aa MW: 12196.5 Da PI: 4.4003 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41 | 3.2e-13 | 52 | 76 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yGdrC+F+H++ Itr_sc000449.1_g00018.1 52 EADCIYYLRTGFCGYGDRCRFNHPR 76 689********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.784 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-6 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-11 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-8 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-7 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MERSSGTQAM EGTSVDPVAE WMAPGGETGL EEPMWQLTLG GGSESYPERP NEADCIYYLR 60 TGFCGYGDRC RFNHPRDRSL TVGAMRSSGG EYPERVGQPV CQVLKDFSFG C |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019175056.1 | 9e-67 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q9SQU4 | 9e-34 | C3H34_ARATH; Zinc finger CCCH domain-containing protein 34 | ||||
TrEMBL | A0A022RY54 | 3e-55 | A0A022RY54_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.G00186.1.p | 3e-55 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16834 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 4e-36 | C3H family protein |
Publications ? help Back to Top | |||
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