PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000440.1_g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 344aa MW: 38847.9 Da PI: 6.6282 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.9 | 2.6e-46 | 11 | 139 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 pGfrFhPt+eel+++yLk+ v gkkl+ +vi ++iy+++PwdLp ++ + +e+ewyfF+ rd+++ +g r+nr+t++g+Wkatg Itr_sc000440.1_g00020.1 11 PGFRFHPTEEELLDFYLKNMVLGKKLRH-NVIGCLNIYRYDPWDLPgHANNVGEREWYFFVARDTRHGSGGRPNRTTEKGFWKATG 95 9************************999.99***************555566999******************************* PP NAM 88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +d++++s ++ +glkktLvfy+grap+g ktdWvm+eyrl Itr_sc000440.1_g00020.1 96 SDRKIFSLshpPNRMIGLKKTLVFYQGRAPRGCKTDWVMNEYRL 139 ******976666778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 53.319 | 9 | 160 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-53 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MEESRLEMEL PGFRFHPTEE ELLDFYLKNM VLGKKLRHNV IGCLNIYRYD PWDLPGHANN 60 VGEREWYFFV ARDTRHGSGG RPNRTTEKGF WKATGSDRKI FSLSHPPNRM IGLKKTLVFY 120 QGRAPRGCKT DWVMNEYRLP DALLPPSSAK NIVLCKIYRK ATSIKVLEQR AAMEDEINTL 180 ASPSFMTIDT TLYCSDHHHH HHHDLVAQSF LTVTMNNNNN KEEEDDDGEY STGTMLTVDG 240 EKAAAAEGEF SKDKLQLLPT SNSNSNSNSI TTSGSSLLLS LQSGEEVKPL LLPTKLELPS 300 AAAKSSSDYW ASHLQDPFWA QLRSPCLLND LIALTPLPPN LHNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-42 | 3 | 160 | 6 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165208.1 | 0.0 | PREDICTED: NAC domain-containing protein 35 | ||||
TrEMBL | A0A1U8EDX1 | 1e-99 | A0A1U8EDX1_CAPAN; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2G2YKB6 | 1e-99 | A0A2G2YKB6_CAPAN; NAC domain-containing protein 67 | ||||
STRING | XP_009605868.1 | 1e-98 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3531 | 22 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 5e-88 | NAC domain containing protein 36 |