PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000436.1_g00032.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 166aa    MW: 17827.9 Da    PI: 5.7234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000436.1_g00032.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-171260254
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                             +y+GVr++k +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l+
  Itr_sc000436.1_g00032.1 12 RYRGVRRRK-WGKWVSEIRVP---G-TqDRLWLGTYATPEAAAVAHDIASVCLR 60
                             7*****998.**********8...3.35********************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-101256IPR001471AP2/ERF domain
PROSITE profilePS5103221.6281271IPR001471AP2/ERF domain
SMARTSM003801.7E-271277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-251272IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-171272IPR016177DNA-binding domain
PRINTSPR003672.8E-91324IPR001471AP2/ERF domain
CDDcd000185.81E-182073No hitNo description
PRINTSPR003672.8E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSSAGGEESQ RRYRGVRRRK WGKWVSEIRV PGTQDRLWLG TYATPEAAAV AHDIASVCLR  60
ETASLDKLNF PALMPPAGVG RGMSPRSVQK VASDAGMAVD AHQRLLLQPP QAVEFSGGGE  120
NRWGGGEAAE EVFRWAETPC CSSGEGSGIS EEAHQALSIS VDDYLV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155541.11e-89PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotO805422e-40ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLA0A1S3XV091e-51A0A1S3XV09_TOBAC; ethylene-responsive transcription factor ERF020-like
TrEMBLA0A1U7VLT91e-51A0A1U7VLT9_NICSY; ethylene-responsive transcription factor ERF020-like
STRINGXP_009767328.12e-52(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.15e-29ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]