PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000434.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 253aa MW: 28515.9 Da PI: 7.961 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55 | 2.8e-17 | 62 | 156 | 2 | 87 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwe 77 fY +YA +vGF+v++s+ +k+ r+ge+ ++ +vCs++g++ ++k+ + +r+r+++r+gC+ak+ k++ dg + Itr_sc000434.1_g00009.1 62 FYIRYACTVGFEVCRSTDSKN-REGEVLRKYLVCSCQGFKPPTKEVclvgdgvgvaSILPKRRRVTNRVGCNAKIIFKLMGDGGYS 146 9****************9998.7888****************9999*******9987888999*********************** PP FAR1 78 vtkleleHnH 87 + +le+ H+H Itr_sc000434.1_g00009.1 147 MFSLEERHTH 156 ********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-14 | 62 | 156 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.0E-11 | 164 | 226 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MDFDSQAAFC GDEDAAIDSG GSSGCVMDIS PRKTKYLMPI YDETSKPFVG QRFCKLDDGV 60 GFYIRYACTV GFEVCRSTDS KNREGEVLRK YLVCSCQGFK PPTKEVCLVG DGVGVASILP 120 KRRRVTNRVG CNAKIIFKLM GDGGYSMFSL EERHTHWGMC IRVMQYNLVF VPFTGMNNHK 180 KSVTFAAGLI AKEDVESYVW LLDNFKRTMG HELTYIVTDQ DPSMRVVVPR RHSVHLCGPP 240 CACWDVFYYF FAV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 124 | KRRRV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019172923.1 | 4e-53 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-11 | FAR1 family protein |