PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000426.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 337aa MW: 37414.8 Da PI: 4.5947

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000426.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.7	7.3e-26	169	218	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k++s e++s+yF++pi +AAkeL+++lT+LK++CR++GI+RWPhRk+ sl Itr_sc000426.1_g00005.1 169 KTLSRETVSNYFYMPISQAAKELNIGLTLLKKRCRELGIRRWPHRKLMSL 218 899********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.223	147	239	IPR003035	RWP-RK domain
Pfam	PF02042	7.5E-21	171	218	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
METHSSSSSS MYDVKMMPKQ EYGVDFESFT QQIDCPLLDY DYFSGYSEYS LWDYHCGFSM 60 QESPFEASPA AASAMEAPLY SSMDIEQSHN IVQDCNSLWG FGNGLGELNG AISEEFGIGA 120 NDVEAENHTL VSNGGSDNME ISNGSVEDNK KGKKSGSGIG VEEKCCISKT LSRETVSNYF 180 YMPISQAAKE LNIGLTLLKK RCRELGIRRW PHRKLMSLES LIKNVQELGK NQGEGKIREA 240 IKVLENERKL LLRTPDLQLD ETTKRLRQAC FKANYKKRRL VGMVDSSSSS SSNANSSCVP 300 ISTLGYGSRV DDIDDDDEDE EIKSLISDCC PSSSVFL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027169625.1	1e-80	protein RKD3-like
TrEMBL	A0A068UVI1	1e-77	A0A068UVI1_COFCA; Uncharacterized protein
STRING	VIT_17s0000g06250.t01	3e-66	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	7e-53	RWP-RK domain-containing protein