PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000423.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 181aa MW: 20536.4 Da PI: 6.3024 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 31 | 53 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Itr_sc000423.1_g00004.1 31 YECTFCKRGFTNAQALGGHMNIH 53 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.7E-5 | 29 | 57 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.17E-7 | 29 | 58 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 31 | 58 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0097 | 31 | 53 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 33 | 53 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MMSSSSDSCG EESEHGPEKF SDENAGVGRS YECTFCKRGF TNAQALGGHM NIHRKDKLKA 60 KQACNNQQKS AELSRKSKSN HEEVYAQISS QQQQQEQSFC SYSSSRAYVK YHQFFFPSSN 120 PSYQFQVLDH RGHYRNFALH GDADLSLRIG SPDDEEQERK EGMEVSEVDL ELRLGPNSAF 180 M |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019180219.1 | 3e-98 | PREDICTED: transcriptional regulator TAC1-like | ||||
TrEMBL | A0A1J6J0M8 | 5e-41 | A0A1J6J0M8_NICAT; Transcriptional regulator tac1 | ||||
STRING | XP_009613300.1 | 8e-41 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2136 | 21 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 1e-15 | C2H2 family protein |