PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000422.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 866aa MW: 98224.2 Da PI: 6.8345

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000422.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.7	1.1e-14	56	129	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY+eY+k++GF++r+s+ + k + + t r+f C + g ++++ ++ C a+l+++++ ++kw+vtk+ +HnH Itr_sc000422.1_g00009.1 56 FYDEYSKRMGFRIRVSHFGRLKADVSSTFRDFLCARDGLKKRTGET--------------CGAMLRIELKGKNKWVVTKFLRDHNH 127 9************************************9998777..............************************ PP FAR1 88 el 89 ++ Itr_sc000422.1_g00009.1 128 SI 129 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-11	56	129	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-25	264	355	IPR018289	MULE transposase domain
Pfam	PF04434	3.9E-11	530	576	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.103	542	578	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-8	553	580	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence Send to blast
MDVEVIDVEE GNMGQHDGVT DDGDDELSES STQDVNRAVE PHLGMEFHSE DAAKTFYDEY 60 SKRMGFRIRV SHFGRLKADV SSTFRDFLCA RDGLKKRTGE TCGAMLRIEL KGKNKWVVTK 120 FLRDHNHSIE SPNNVHYLRH TAMTTKVATE NSLAGLVPSG VMYVSVDGSH APIEMNHGVK 180 NCRTADSDRL TKNTTTLIYA PKQYNQRRTL GRDAHSLLDY FKKMQAENPG FYYAIQLDED 240 NRMANVFWAD SRSRNAYSHF GDAVTLDTTY RVKQCKVPFA PFTGVNHHGQ SILFGCALLL 300 DESEATFVWL FKTFLAAMNN HAPISITTDQ DRAIQSAVAQ VFPETCHCIN KWDVLRQGQE 360 KMAPVCIMHP NFQVELYNCI NMTETVEEFE LCWDSILRKY DLQKNDWLHS IYNVRQRWAP 420 VYFRASFFAA IASNQGSESS FFDGYVNQQT TLPIFIRQYE AALENSFEKE IESDFETTCT 480 TPVPRTPSPM EKQAANLYTR WIFAKFQVEL VETFVYTANM IDGDGTVSMY RVAKFEDDSK 540 AYIVSLNCSD MKAKCSCQMF EYSGILCRHI LTVFTVTNVL TLPSHYILKR WTRNAKSVVG 600 SDECGERHSN ESMTARYNSL CREAIRYAEE GALAPETYNV ALSALKEAKK KVSAAKKNVA 660 RVIPPNSQVS GVYDDRRSSS SAPDMNPILW PCQDEMIKRF NLNVSVPSKP VTDLNIPRMA 720 PVSVHRDDGH TDNMVSLPCL KSMTWVMENK SSTPANRVAV INLKLQDYSR STPQESEVKF 780 QLSKVTLEPM LKSMAYISEQ LSTANRVAVI NLKLQDTETT SGESEVKFQV SRDTLGAMLR 840 SMAYIREQLS NTVEPQVETP SKKQRK

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence Send to blast

MDVEVIDVEE GNMGQHDGVT DDGDDELSES STQDVNRAVE PHLGMEFHSE DAAKTFYDEY  60
SKRMGFRIRV SHFGRLKADV SSTFRDFLCA RDGLKKRTGE TCGAMLRIEL KGKNKWVVTK  120
FLRDHNHSIE SPNNVHYLRH TAMTTKVATE NSLAGLVPSG VMYVSVDGSH APIEMNHGVK  180
NCRTADSDRL TKNTTTLIYA PKQYNQRRTL GRDAHSLLDY FKKMQAENPG FYYAIQLDED  240
NRMANVFWAD SRSRNAYSHF GDAVTLDTTY RVKQCKVPFA PFTGVNHHGQ SILFGCALLL  300
DESEATFVWL FKTFLAAMNN HAPISITTDQ DRAIQSAVAQ VFPETCHCIN KWDVLRQGQE  360
KMAPVCIMHP NFQVELYNCI NMTETVEEFE LCWDSILRKY DLQKNDWLHS IYNVRQRWAP  420
VYFRASFFAA IASNQGSESS FFDGYVNQQT TLPIFIRQYE AALENSFEKE IESDFETTCT  480
TPVPRTPSPM EKQAANLYTR WIFAKFQVEL VETFVYTANM IDGDGTVSMY RVAKFEDDSK  540
AYIVSLNCSD MKAKCSCQMF EYSGILCRHI LTVFTVTNVL TLPSHYILKR WTRNAKSVVG  600
SDECGERHSN ESMTARYNSL CREAIRYAEE GALAPETYNV ALSALKEAKK KVSAAKKNVA  660
RVIPPNSQVS GVYDDRRSSS SAPDMNPILW PCQDEMIKRF NLNVSVPSKP VTDLNIPRMA  720
PVSVHRDDGH TDNMVSLPCL KSMTWVMENK SSTPANRVAV INLKLQDYSR STPQESEVKF  780
QLSKVTLEPM LKSMAYISEQ LSTANRVAVI NLKLQDTETT SGESEVKFQV SRDTLGAMLR  840
SMAYIREQLS NTVEPQVETP SKKQRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019197789.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_019197790.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1U7WFV1	0.0	A0A1U7WFV1_NICSY; protein FAR1-RELATED SEQUENCE 3 isoform X1
STRING	XP_009776131.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]