PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000419.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 256aa    MW: 28666.3 Da    PI: 8.839
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000419.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.71.6e-51141391128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeelvv+yLk kv + +l++ ++i+evdi+k++PwdLp      e+e yfFs+r+ ky++g+r+nrat+sgyWkat
  Itr_sc000419.1_g00006.1  14 LPPGFRFHPTDEELVVQYLKCKVLSCPLPA-SIIPEVDICKSDPWDLPGD---LEQERYFFSTREVKYPNGNRSNRATSSGYWKAT 95 
                              79****************************.89***************54...46799**************************** PP

                      NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g dk+++s+  +++lvg+kktLvfykg+ p+g +tdW+mheyrl
  Itr_sc000419.1_g00006.1  96 GLDKQIVSSkgHRQLVGMKKTLVFYKGKPPQGARTDWIMHEYRL 139
                              ********9777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-619162IPR003441NAC domain
PROSITE profilePS5100558.10814162IPR003441NAC domain
PfamPF023655.0E-2715139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEKLSFVKNG VLRLPPGFRF HPTDEELVVQ YLKCKVLSCP LPASIIPEVD ICKSDPWDLP  60
GDLEQERYFF STREVKYPNG NRSNRATSSG YWKATGLDKQ IVSSKGHRQL VGMKKTLVFY  120
KGKPPQGART DWIMHEYRLT NAESLPNNPP QENWVLCRIF LKKRGAKNED ENTPAQAQTP  180
TQAQAVTNNR GAGLKNNGKP VFYDFLARER TDLNLAPASS SSGSSGVTEA SCNDKTDDHE  240
ESSSCCNSFT TFRTKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-521216715170NO APICAL MERISTEM PROTEIN
1ut4_B3e-521216715170NO APICAL MERISTEM PROTEIN
1ut7_A3e-521216715170NO APICAL MERISTEM PROTEIN
1ut7_B3e-521216715170NO APICAL MERISTEM PROTEIN
4dul_A3e-521216715170NAC domain-containing protein 19
4dul_B3e-521216715170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181154.11e-168PREDICTED: NAC domain-containing protein 83-like isoform X1
RefseqXP_019181155.11e-168PREDICTED: NAC domain-containing protein 83-like isoform X2
SwissprotQ9FY932e-99NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A482ETG61e-180A0A482ETG6_IPOBA; NAC14
STRINGcassava4.1_014491m1e-129(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-98NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]