PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000408.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 183aa MW: 20873.4 Da PI: 9.076 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.4e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++ +G + Wkt+a + g++R++k+c++rw++yl Itr_sc000408.1_g00016.1 15 KGAWTAEEDKKLTQYIENHGAKKWKTVAIKSGLNRCGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.6e-15 | 69 | 113 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Itr_sc000408.1_g00016.1 69 GNIAEDEADLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 113 566689***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.637 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.85E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-10 | 17 | 62 | No hit | No description |
SMART | SM00717 | 9.3E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.844 | 67 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-13 | 71 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.83E-10 | 73 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MSSRKSGGAR MHVHKGAWTA EEDKKLTQYI ENHGAKKWKT VAIKSGLNRC GKSCRLRWLN 60 YLRPNIKRGN IAEDEADLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN THLSKKVTQV 120 GKSSLSATQN QPPKANAEQV GGNKESEEEE DPELNFDVDE FFDFSVEGTY GTEWVNKFLE 180 VEN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 15 | 117 | 7 | 108 | B-MYB |
1h8a_C | 4e-28 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019173502.1 | 1e-124 | PREDICTED: transcription factor MYB114-like isoform X2 | ||||
Swissprot | P10290 | 3e-51 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A1Q3BY67 | 6e-86 | A0A1Q3BY67_CEPFO; Myb_DNA-binding domain-containing protein | ||||
STRING | EOY24284 | 5e-82 | (Theobroma cacao) | ||||
STRING | cassava4.1_024299m | 5e-82 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-53 | myb domain protein 6 |