PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000397.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 575aa MW: 63591.5 Da PI: 4.6019

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000397.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.6	1e-52	18	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp+G+rF+Ptdeelv++yLk k++g++ e+ +vi+evdi+k+ePwdLp + v+++++ew+fF+++d+ky++g+r nrat++gyWk Itr_sc000397.1_g00016.1 18 LPVGYRFRPTDEELVDHYLKMKITGSEAEV-SVIREVDICKHEPWDLPdMsFVESHDNEWFFFCPKDRKYQNGQRLNRATERGYWK 102 799**********************999.99**********96347788999************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd+++ s+kg++vg+kktLv+y grap+g++t Wv+heyr Itr_sc000397.1_g00016.1 103 ATGKDRTISSRKGAKVGMKKTLVYYLGRAPEGKRTYWVIHEYRT 146 ****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-58	14	169	IPR003441	NAC domain
PROSITE profile	PS51005	55.3	18	169	IPR003441	NAC domain
Pfam	PF02365	5.3E-26	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MAVLKVERPT GLPPLHSLPV GYRFRPTDEE LVDHYLKMKI TGSEAEVSVI REVDICKHEP 60 WDLPDMSFVE SHDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRTI SSRKGAKVGM 120 KKTLVYYLGR APEGKRTYWV IHEYRTTEKA FDGTHSGQAP FVLCRLFKKV ELKLDDGAEI 180 SNSGEVDPIV SSPTVVKTPT DDEQSEGGTP LMKSDHIKTQ PLTPGQSSVE EAPAVHFPID 240 SNSNSCIADI TEDQVLDITS NPADPDLEPW KFYFDPSAGP IFSPTYEQMP EFGSSYFYGD 300 VINCISNNND VQFQYGTNGF DPNEFLNPAA LVSSDGESEE VTQRLAEPVD FENELFVTNN 360 QEALLQRQVN YVANSLVGTF ATPTMGSDHQ NWNLDLQNNN YLGQSLFSSV STGTVAPQMV 420 FPQAETVGNI SSSGTGITLR TRQPQNQRGD QQSTAQGTAP RRIRFSTKFQ VGPVQCTRPQ 480 TTPEDNALSK EDASTVDKPN STASATAQDP ILEGRGEDNS EITTSEKEGD TSACRNETSV 540 KASSKTALCS SSSIYIPKGI LVNLAQMYLV SLELC

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MAVLKVERPT GLPPLHSLPV GYRFRPTDEE LVDHYLKMKI TGSEAEVSVI REVDICKHEP  60
WDLPDMSFVE SHDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRTI SSRKGAKVGM  120
KKTLVYYLGR APEGKRTYWV IHEYRTTEKA FDGTHSGQAP FVLCRLFKKV ELKLDDGAEI  180
SNSGEVDPIV SSPTVVKTPT DDEQSEGGTP LMKSDHIKTQ PLTPGQSSVE EAPAVHFPID  240
SNSNSCIADI TEDQVLDITS NPADPDLEPW KFYFDPSAGP IFSPTYEQMP EFGSSYFYGD  300
VINCISNNND VQFQYGTNGF DPNEFLNPAA LVSSDGESEE VTQRLAEPVD FENELFVTNN  360
QEALLQRQVN YVANSLVGTF ATPTMGSDHQ NWNLDLQNNN YLGQSLFSSV STGTVAPQMV  420
FPQAETVGNI SSSGTGITLR TRQPQNQRGD QQSTAQGTAP RRIRFSTKFQ VGPVQCTRPQ  480
TTPEDNALSK EDASTVDKPN STASATAQDP ILEGRGEDNS EITTSEKEGD TSACRNETSV  540
KASSKTALCS SSSIYIPKGI LVNLAQMYLV SLELC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	17	169	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	17	169	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	17	169	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	17	169	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-43	17	169	19	168	NAC domain-containing protein 19
3swm_B	2e-43	17	169	19	168	NAC domain-containing protein 19
3swm_C	2e-43	17	169	19	168	NAC domain-containing protein 19
3swm_D	2e-43	17	169	19	168	NAC domain-containing protein 19
3swp_A	2e-43	17	169	19	168	NAC domain-containing protein 19
3swp_B	2e-43	17	169	19	168	NAC domain-containing protein 19
3swp_C	2e-43	17	169	19	168	NAC domain-containing protein 19
3swp_D	2e-43	17	169	19	168	NAC domain-containing protein 19
4dul_A	2e-43	17	169	16	165	NAC domain-containing protein 19
4dul_B	2e-43	17	169	16	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019195114.1	0.0	PREDICTED: NAC domain-containing protein 62-like
TrEMBL	A0A484KQH1	0.0	A0A484KQH1_9ASTE; Uncharacterized protein
STRING	XP_009608176.1	1e-164	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3363	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	4e-83	TCV-interacting protein