 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc000390.1_g00001.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
| Family | MYB_related | ||||||||
| Protein Properties | Length: 296aa MW: 33561.9 Da PI: 4.5649 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 27.3 | 8.6e-09 | 3 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
+W++Ia ++ gRt++++k++w+++l
Itr_sc000390.1_g00001.1 3 RWSLIATQLP-GRTDNEIKNYWNSHL 27
5*********.************986 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 15.747 | 1 | 31 | IPR017930 | Myb domain |
| Pfam | PF00249 | 1.1E-6 | 3 | 27 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 4.57E-7 | 3 | 31 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 3.1E-12 | 3 | 27 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 1.93E-6 | 3 | 27 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 296 aa Download sequence Send to blast |
MCRWSLIATQ LPGRTDNEIK NYWNSHLSRK FYSFRRAGSE KTIENLETDL VKAAEQTKRR 60 RGKVSRSDMK KNKTTGYKHY SSNNNQAPEF PHFQTHHTHQ DTIPSLCTDP VNNNVVVSTV 120 QISSTPPILM DKEDIDTSSF LCMAEDYFSL DDIMPVLEEE MDPAGIILST SLNGSLENIV 180 KEFGLQVVQS QHDLAKSGNS SVDIYSGLIP NDHHQFGGEN NESTATSSSF PVEHHCSLAQ 240 NISDWDDLQY FWDDSGNNLC NTQNLMPQQN EDDVMLSSPW PWDDTFYDIM HGNTGE |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019188365.1 | 1e-122 | PREDICTED: transcription repressor MYB6-like | ||||
| Refseq | XP_019188366.1 | 1e-122 | PREDICTED: transcription repressor MYB6-like | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA19665 | 2 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G47460.1 | 4e-16 | myb domain protein 12 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|