PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000372.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 468aa MW: 51409.2 Da PI: 8.807

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000372.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.9e-16	44	88	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ +++da k++G W++I +++g ++t+ q++s+ qk+ Itr_sc000372.1_g00001.1 44 RERWTEEEHRKFLDALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 88 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.02E-17	38	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.517	39	93	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.0E-17	42	91	IPR006447	Myb domain, plants
SMART	SM00717	3.0E-13	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-13	44	87	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-9	44	84	IPR009057	Homeodomain-like
CDD	cd00167	2.17E-10	46	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MVPAPMTSQD QNGGMGNCIS ARRIQQSDEH AIKVRKPYTI TKQRERWTEE EHRKFLDALK 60 LYGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVERESNGDD AKTVKPIEIP PPRPKRKPMH 120 PYPRKLVITP VSVGMLDLEK PTRSVSPNLS LSGKENQSPT SVLFALDSEG QASADSSPNA 180 SPSCVTSATG GGILFSKRCN VLVEENGSSS PLQVNTDDPT PIEPPPGNLE LLPLDDGYVR 240 ESSTAQYLKL FGKTVLVNGS HTLQSPTSGD LKALKMATQP FSWNFLSIGH GDSECKPSTF 300 ADGTLTPRSV YHLPLAQNEY PKTMESINPV PSLPWALPHA PSSAGFPCVQ VHSPIPIKAR 360 PLSFDSKDVE EKEKEGSSTC SNSGSVNVGM CVDKNLDTET QSGQQSFEKL GSDLSCIIKP 420 TILEQKTASS TKRTKGFLPY KRCLAERATR SPTITSEERE KQRTRLCL

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MVPAPMTSQD QNGGMGNCIS ARRIQQSDEH AIKVRKPYTI TKQRERWTEE EHRKFLDALK  60
LYGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVERESNGDD AKTVKPIEIP PPRPKRKPMH  120
PYPRKLVITP VSVGMLDLEK PTRSVSPNLS LSGKENQSPT SVLFALDSEG QASADSSPNA  180
SPSCVTSATG GGILFSKRCN VLVEENGSSS PLQVNTDDPT PIEPPPGNLE LLPLDDGYVR  240
ESSTAQYLKL FGKTVLVNGS HTLQSPTSGD LKALKMATQP FSWNFLSIGH GDSECKPSTF  300
ADGTLTPRSV YHLPLAQNEY PKTMESINPV PSLPWALPHA PSSAGFPCVQ VHSPIPIKAR  360
PLSFDSKDVE EKEKEGSSTC SNSGSVNVGM CVDKNLDTET QSGQQSFEKL GSDLSCIIKP  420
TILEQKTASS TKRTKGFLPY KRCLAERATR SPTITSEERE KQRTRLCL

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177138.1	0.0	PREDICTED: protein REVEILLE 2-like
Swissprot	F4KGY6	2e-53	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	X5I0Q8	1e-138	X5I0Q8_IPONI; Myb family transcription factor
STRING	XP_009613640.1	1e-125	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3185	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	6e-44	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]