PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000358.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 27263.4 Da PI: 9.9568 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.2 | 4.6e-16 | 128 | 212 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k +++s+v+ +l lp +f+++h +k ++ ++tl de+g + + k+ k++ l++GW++F+ +++L +gD +vF+l++ Itr_sc000358.1_g00019.1 128 FIKPMLQSHVTGGFWLGLPVQFCKAHL-PK-RDEMITLVDENGDESDTKYLALKTG----LSGGWRGFALDHELVDGDALVFQLIE 207 89**********************995.33.5569***************666666....***********************998 PP SSEE. CS B3 87 rsefe 91 ++f+ Itr_sc000358.1_g00019.1 208 PTRFK 212 76664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.73E-22 | 122 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-18 | 123 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.66E-25 | 126 | 212 | No hit | No description |
Pfam | PF02362 | 2.8E-14 | 128 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-19 | 128 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.068 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVMSKKVLAY EESRQKRLEE NKKRMEELNL NKLAQALRNS PKPSPMKKTK PRAKQPVELT 60 AVRRSSRVAD KPAPNYKEMG LETLRIGRRS YGRRDLLNRV YASDGNRLDA IQRAEDLEAG 120 LDNQFPSFIK PMLQSHVTGG FWLGLPVQFC KAHLPKRDEM ITLVDENGDE SDTKYLALKT 180 GLSGGWRGFA LDHELVDGDA LVFQLIEPTR FKAFMVNFTL NLLQVYIIRV NEAEEKGAE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019157841.1 | 1e-155 | PREDICTED: B3 domain-containing protein At3g19184 | ||||
Swissprot | Q1G3M3 | 8e-83 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A484MAT0 | 1e-123 | A0A484MAT0_9ASTE; Uncharacterized protein | ||||
STRING | XP_009772546.1 | 1e-113 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-81 | B3 family protein |
Publications ? help Back to Top | |||
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