PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000337.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 628aa MW: 66722.8 Da PI: 7.3279

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000337.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	207	254	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 r+ W++ Ed l+ avk+ G g+W++I++ Rt+ q+ rw + Itr_sc000337.1_g00011.1 207 RKFWSEAEDMELISAVKKRGEGNWASISKGDFkGDRTASQLSKRWAVL 254 678*************************84223599999999999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.974	202	259	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-11	203	255	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.39E-11	204	256	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-7	206	257	IPR001005	SANT/Myb domain
CDD	cd11660	3.37E-11	208	256	No hit	No description
Pfam	PF00249	6.7E-6	210	252	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
MSEKSKDHKK CYVSDEEIST LLQRYTLKTV LALLEEVDQV EQAKEVKYDW NALVKKTKTG 60 ITNAREYQML WRHLAYGHAF VDGLVDEAQP LDDASDLECE LEAYPAVSSE ASAEASAFVK 120 VLVGSGTAND SHMSNGMTVE APLTISIPNG QRSINSSGTS DQSISMQESK VIIPVFVPKK 180 PLANVISTKG LDTNGPSDAN LPPPRKRKFW SEAEDMELIS AVKKRGEGNW ASISKGDFKG 240 DRTASQLSKR WAVLRKQQGA LVGNNSELSE MHLAHRAMSL ALDVPMGDNS KAASSIRSGL 300 GGAGLTSGCL LSEGTNANAA PGNPVNPLAY DTSSVNRKSQ HQGQQDFASN AAPKLATLGP 360 SKLLVSEKPS TKPNISTNLM VKAAAVAAGA RIASPSDAAS LFRAAQSTNS VHISTGGGPL 420 IKSSFSGNTN ALSSNVHLIR TSLPSNSTSL LSASRTEPKP VQCQPVNPAS PVVQSNVVGM 480 ASGLNASAKV VSNGTHSNPV AELGIKNVKE TAVSSLEIVT EKVVPQQNQA TCPNIASEGD 540 QISASTRNAL VENAQGDQNA FPGNSSREKI GMTCVSDGPV KENGQRNHKA SFEYEQPELK 600 ELRKKQIRNG DLEDLRSMIV DVADERLT

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

MSEKSKDHKK CYVSDEEIST LLQRYTLKTV LALLEEVDQV EQAKEVKYDW NALVKKTKTG  60
ITNAREYQML WRHLAYGHAF VDGLVDEAQP LDDASDLECE LEAYPAVSSE ASAEASAFVK  120
VLVGSGTAND SHMSNGMTVE APLTISIPNG QRSINSSGTS DQSISMQESK VIIPVFVPKK  180
PLANVISTKG LDTNGPSDAN LPPPRKRKFW SEAEDMELIS AVKKRGEGNW ASISKGDFKG  240
DRTASQLSKR WAVLRKQQGA LVGNNSELSE MHLAHRAMSL ALDVPMGDNS KAASSIRSGL  300
GGAGLTSGCL LSEGTNANAA PGNPVNPLAY DTSSVNRKSQ HQGQQDFASN AAPKLATLGP  360
SKLLVSEKPS TKPNISTNLM VKAAAVAAGA RIASPSDAAS LFRAAQSTNS VHISTGGGPL  420
IKSSFSGNTN ALSSNVHLIR TSLPSNSTSL LSASRTEPKP VQCQPVNPAS PVVQSNVVGM  480
ASGLNASAKV VSNGTHSNPV AELGIKNVKE TAVSSLEIVT EKVVPQQNQA TCPNIASEGD  540
QISASTRNAL VENAQGDQNA FPGNSSREKI GMTCVSDGPV KENGQRNHKA SFEYEQPELK  600
ELRKKQIRNG DLEDLRSMIV DVADERLT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019155980.1	0.0	PREDICTED: uncharacterized protein LOC109152793
STRING	XP_009795383.1	1e-145	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3434	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-68	MYB_related family protein