PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000335.1_g00025.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 260aa MW: 29485 Da PI: 5.452

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000335.1_g00025.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.3	1.7e-41	8	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgy 82 ppG+rF Pt+eelv++yLk+k+eg+ e +v i+ ++iy+++Pw+Lp+ k++ + ++w+fF++ ++++a+g r++r t+ gy Itr_sc000335.1_g00025.1 8 PPGYRFFPTEEELVSFYLKHKLEGRFQEHIDVvIPVLNIYDHDPWSLPQfagKYNRsDPEQWFFFIPMQEREARGGRPTRLTAGGY 93 89********************9977666669999*******646633332556********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+ v+s +++++g k+t+vfy+grap+g+kt+W m+eyr+ Itr_sc000335.1_g00025.1 94 WKATGSPGLVYSGNNRVIGGKRTMVFYTGRAPNGRKTEWKMNEYRF 139 ******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-47	7	159	IPR003441	NAC domain
PROSITE profile	PS51005	48.584	7	159	IPR003441	NAC domain
Pfam	PF02365	2.0E-21	8	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEEEDFPPPG YRFFPTEEEL VSFYLKHKLE GRFQEHIDVV IPVLNIYDHD PWSLPQFAGK 60 YNRSDPEQWF FFIPMQEREA RGGRPTRLTA GGYWKATGSP GLVYSGNNRV IGGKRTMVFY 120 TGRAPNGRKT EWKMNEYRFT ERETSNSPQE FILCRVYKKP KCARAFDRRP ACVAPAAPPA 180 ADGGELLALQ PPPPPQMAAA ANDASASTSQ QKAEADKKSS SQETSSPSPP HGGDNVEDEP 240 VWDFSDMILW EWDPFKVLYN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-33	8	164	21	173	NAC domain-containing protein 19
3swm_B	4e-33	8	164	21	173	NAC domain-containing protein 19
3swm_C	4e-33	8	164	21	173	NAC domain-containing protein 19
3swm_D	4e-33	8	164	21	173	NAC domain-containing protein 19
3swp_A	4e-33	8	164	21	173	NAC domain-containing protein 19
3swp_B	4e-33	8	164	21	173	NAC domain-containing protein 19
3swp_C	4e-33	8	164	21	173	NAC domain-containing protein 19
3swp_D	4e-33	8	164	21	173	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019187227.1	1e-128	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	6e-67	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2G2YPI7	3e-83	A0A2G2YPI7_CAPAN; NAC domain-containing protein 90
STRING	XP_009801687.1	3e-83	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-67	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]