PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000333.1_g00015.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 759aa MW: 86745.1 Da PI: 8.232

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000333.1_g00015.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.5	3.4e-21	43	117	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fYn YA++vGF++r+ + ++s+ +g++++r+fvC keg++++ tr+gC a +kv+k ++gkw+++++++eHn Itr_sc000333.1_g00015.1 43 EFYNLYATKVGFRIRIGQLYRSRVDGSVISRRFVCFKEGFQTN--------------TRVGCPAFIKVQKADSGKWVIATINKEHN 114 6*************************************876..............799************************ PP FAR1 87 Hel 89 H+l Itr_sc000333.1_g00015.1 115 HDL 117 *99 PP
2	FAR1	62.8	1e-19	192	267	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 kfY++YA ++GF+vr+ + +sk +g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v++ + eHn Itr_sc000333.1_g00015.1 192 KFYSTYAANTGFKVRIGQLFRSKLDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQESGRWVVDRHQIEHN 263 6************************************9998..............4899*********************** PP FAR1 87 Hela 90 H+l Itr_sc000333.1_g00015.1 264 HDLD 267 *995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-17	43	117	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.2E-15	192	267	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-26	367	459	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.423	645	681	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.4E-8	652	678	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-8	656	683	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MTVRAKPTGS LVLKNNAHHD DEGESRPEPY VGLEFDTAEE AQEFYNLYAT KVGFRIRIGQ 60 LYRSRVDGSV ISRRFVCFKE GFQTNTRVGC PAFIKVQKAD SGKWVIATIN KEHNHDLELP 120 GEITPARIQR KSLPAPRTTT VLSARTGLRS TDEDGPSGVL DSKRLKREEV GGEPKGEPCK 180 GLEFSSANDA YKFYSTYAAN TGFKVRIGQL FRSKLDGSIT SRRFVCSKEG HQHPSRVGCG 240 AFMRIQRQES GRWVVDRHQI EHNHDLDRPT DTNRRLSTSV VFKEEASSGL DNLDFIDSNG 300 DLTIVVRGRE SKIGSDWYAV LLEYFQTRQA EDMGFFYAVQ MCDGRAMNLF WADARSRFSC 360 TQFGDAIVFD TTYRRGSHSV PFASFVGVNH HRQPVLLGCA LIADESAESF TWVLQAWQRA 420 MSGRRPVSII ADQDWAVQHS IAQVFPGTHH RFSAWQIVSK EQENLGALLS LNPEFKYEYE 480 TCIFQSQTAN EFDAAWNVLI NKYNLKDNAW LKDMSRMRKS WVPLYIRGTF FAGIPVDGSL 540 KSYFCPMLTP QTPLNEFVLR YEKAIEEGRD EERKEDFNSL NLPTVLHTKD PIEEQCRRLY 600 TTAMFKVFQK ELMECYSYVG IKINVEGAIS RYLVQKCAPN ADERNTVAFN ASNLNISCSC 660 RMFEFEGVLC RHALKVFQIM NVRELPSRYI LHRWSKSAKY GILRDVDSGG GSQDFRALML 720 WSLREEANKF IETGATSLER YKLAFEIMQE GNRTLRWQN

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MTVRAKPTGS LVLKNNAHHD DEGESRPEPY VGLEFDTAEE AQEFYNLYAT KVGFRIRIGQ  60
LYRSRVDGSV ISRRFVCFKE GFQTNTRVGC PAFIKVQKAD SGKWVIATIN KEHNHDLELP  120
GEITPARIQR KSLPAPRTTT VLSARTGLRS TDEDGPSGVL DSKRLKREEV GGEPKGEPCK  180
GLEFSSANDA YKFYSTYAAN TGFKVRIGQL FRSKLDGSIT SRRFVCSKEG HQHPSRVGCG  240
AFMRIQRQES GRWVVDRHQI EHNHDLDRPT DTNRRLSTSV VFKEEASSGL DNLDFIDSNG  300
DLTIVVRGRE SKIGSDWYAV LLEYFQTRQA EDMGFFYAVQ MCDGRAMNLF WADARSRFSC  360
TQFGDAIVFD TTYRRGSHSV PFASFVGVNH HRQPVLLGCA LIADESAESF TWVLQAWQRA  420
MSGRRPVSII ADQDWAVQHS IAQVFPGTHH RFSAWQIVSK EQENLGALLS LNPEFKYEYE  480
TCIFQSQTAN EFDAAWNVLI NKYNLKDNAW LKDMSRMRKS WVPLYIRGTF FAGIPVDGSL  540
KSYFCPMLTP QTPLNEFVLR YEKAIEEGRD EERKEDFNSL NLPTVLHTKD PIEEQCRRLY  600
TTAMFKVFQK ELMECYSYVG IKINVEGAIS RYLVQKCAPN ADERNTVAFN ASNLNISCSC  660
RMFEFEGVLC RHALKVFQIM NVRELPSRYI LHRWSKSAKY GILRDVDSGG GSQDFRALML  720
WSLREEANKF IETGATSLER YKLAFEIMQE GNRTLRWQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019180804.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Refseq	XP_019180805.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Refseq	XP_019180806.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Refseq	XP_019180808.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A484MB22	0.0	A0A484MB22_9ASTE; Uncharacterized protein
STRING	Solyc10g084220.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]