PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000332.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 327aa    MW: 35407.9 Da    PI: 6.1071
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000332.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.6e-33181238259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  Itr_sc000332.1_g00005.1 181 EDGYRWRKYGQKAVKNSPFPRSYYRCTNTKCTVKKRVERSSEDPTIVITTYEGQHCHH 238
                              8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33165239IPR003657WRKY domain
SuperFamilySSF1182903.4E-28172238IPR003657WRKY domain
PROSITE profilePS5081129.643175240IPR003657WRKY domain
SMARTSM007741.5E-38180239IPR003657WRKY domain
PfamPF031061.5E-25181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDEDKGKVDR GVDDFATDSS WALGGGGDSD GVYFFGGGGV EKDESNILSD FGWSFQEEEE  60
HGGGFSSRIN SDLAGNSSND RFSVLESATT AAATPSDATE PVAVQAEQTS SSSSDDAPEK  120
STASGGSTSR QPADTACCVV SAQPLLRREW RATSKVKKKG QKRIRQPRFA FMTKSEVDHL  180
EDGYRWRKYG QKAVKNSPFP RSYYRCTNTK CTVKKRVERS SEDPTIVITT YEGQHCHHTV  240
GFPRGGFIGE AAAYMSQSYP LTSQFYLPAL QFPQEGSLGI PQPHHQSQGN NRGPTAAMAD  300
PCSHPAPQLP PDEGLLGDIV PPGIRNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25171237874Probable WRKY transcription factor 4
2lex_A3e-25171237874Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166374.10.0PREDICTED: probable WRKY transcription factor 57 isoform X1
RefseqXP_019166375.10.0PREDICTED: probable WRKY transcription factor 57 isoform X1
RefseqXP_019166376.10.0PREDICTED: probable WRKY transcription factor 57 isoform X1
RefseqXP_019166377.10.0PREDICTED: probable WRKY transcription factor 57 isoform X1
TrEMBLA0A484L7R61e-117A0A484L7R6_9ASTE; Uncharacterized protein
STRINGXP_009610330.11e-102(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80312228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-69WRKY DNA-binding protein 57