PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000332.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 520aa    MW: 58487 Da    PI: 9.4113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000332.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055457479123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp C+++F++   L  H r+H
  Itr_sc000332.1_g00004.1 457 HECPFCNRVFKSGQALGGHKRSH 479
                              78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.743835IPR007087Zinc finger, C2H2
PfamPF139127.5E-5830IPR007087Zinc finger, C2H2
SMARTSM003551.2830IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SMARTSM003550.1292114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9192119IPR007087Zinc finger, C2H2
PfamPF139124.6E-893116IPR007087Zinc finger, C2H2
SuperFamilySSF576675.83E-793114No hitNo description
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576675.83E-7371398No hitNo description
PROSITE profilePS501578.787376398IPR007087Zinc finger, C2H2
PfamPF139129.1E-7376400IPR007087Zinc finger, C2H2
SMARTSM003558.4376398IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280378398IPR007087Zinc finger, C2H2
SuperFamilySSF576678.48E-5454481No hitNo description
PROSITE profilePS501579.536457479IPR007087Zinc finger, C2H2
PfamPF139122.5E-10457479IPR007087Zinc finger, C2H2
SMARTSM003550.013457479IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280459479IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDDQDLKFMC KLCKKKYPCG KSLGGHMRSH VNVIPTCSSS ELDEQRGEMK KIASLKMQAR  60
FELGGNSGYG LRENPKKTWR ATDSNLSVPQ ERVCKQCGKV FQSIKALCGH MACHSEKEKG  120
GGLKDENSWT SESKKAVVMD SNSDTEAEDL RNKSSARPKR YKKIVHTCSF TLPNDVVVNS  180
GSEIFEQDQQ EVAKCLMMLS RDSGNWNGVS SFMESSDNNS VVLETKSSSI DMKTPKMDGS  240
NRDESPKTRK MVGVLDAEVI ESENSDSMYF LGENKTAESD VSVDGFHRNR DDKCFESKIR  300
VEKDHLKVMN RIKGYIKSRA GSKDYDYRDF GVASNSGKHD SRRKSKDSSY DPEYKTGAYK  360
KIKLSFSDTK KKKKKYECLN CKKIFSSYQA LGGHRPCHKR TLESRYETGE NRPDVDTTYN  420
NINGGNHREF LGSRKATAEG SPCYLGTKIK AKKAKGHECP FCNRVFKSGQ ALGGHKRSHF  480
IDGAEENRHQ RTQVIKAAIP GLLDLNVVPI ETGNDVQFMW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370382KKKKKYECLNCKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166354.10.0PREDICTED: uncharacterized protein LOC109162114
TrEMBLA0A2G3CFI91e-157A0A2G3CFI9_CAPCH; Uncharacterized protein
STRINGXP_009598345.11e-157(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000073161e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-54C2H2-like zinc finger protein