PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000300.1_g00050.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 592aa    MW: 67814.9 Da    PI: 5.435
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000300.1_g00050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.31.4e-862205904374
                     GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....f 84 
                               Ll+ Ae v ++++  a+ +L+   +l+s++g+ +qRl+ yf eAL+ ++   +++++ + +  ++ + +  +eel+  +      
  Itr_sc000300.1_g00050.1 220 HLLASAERVGQKKFDSAKDFLSMCDKLSSKNGNLVQRLVYYFSEALRDKVDWqTGEKTPENFGKKQIE-Y-LKEELTCPRKcileT 303
                              58999*********************************************974555555555555554.2.344433332235667 PP

                     GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLak 167
                              ++ +P+l++  ++  qa+ e v++++++HiiD+di++G+QW  L+qaLa +R   ++  +l+i +++    +s   +eetg++L++
  Itr_sc000300.1_g00050.1 304 HQNFPFLQVIEFASVQAVIEHVAEAKKIHIIDLDINHGMQWTILMQALAaARHaeSSIENLKISALVI---KSGPLIEETGKQLTS 386
                              889*********************************************97787655567*******99...58999********** PP

                     GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                              fA++l++pf+f+++ ++++ +++ ++++v+++EalaV   +  +++ +++  le    ++++++++++P+v+v++e ea+hns+ F
  Itr_sc000300.1_g00050.1 387 FADSLKLPFSFKTVKVQDILEVNEQSFEVEEDEALAVYGLFFFMTMISKQDRLE----HLMRVMRTIRPRVMVITEVEANHNSPVF 468
                              **********************************************95555555....5*************************** PP

                     GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                              ++rf+e+l +ysa++dsle  l +++  r+++Ere l+r+i+n+va+eg+er+ rh +++ Wr+ + ++G+k+v++s + + qa+l
  Itr_sc000300.1_g00050.1 469 VNRFTESLFFYSAFLDSLEHFLKHDEYIRANLEREQLSRRIRNIVAAEGEERVIRHVSMNVWRAFFARFGMKEVEMSMSSVLQANL 554
                              ************************************************************************************** PP

                     GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + ++++ ++  +++++ +s+++gWk+ pL+svSaW+
  Itr_sc000300.1_g00050.1 555 VFNNFPyGKYCTLDNDGKSMIIGWKRTPLFSVSAWK 590
                              ******88889999*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.411191569IPR005202Transcription factor GRAS
PfamPF035144.9E-84220590IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MSGLNKSDVF GGAPDRNRCI DDVENNDDNM KAVKSRPPAD EVEEWGDSTE IAWFSSSQVL  60
DQDGDETARK EAPLLPRHKH EHQLQLVVDC MSLDDLDFDE EASSVQPFSG NQELSESKRK  120
RAENALPSSL KLLNNFQNRF RRLTGEKVNA APSCSSSHDE SREMNCCSST RLWINEVLQL  180
AAHKFIENSS HGDSELNNLF PNSCWGLHGE DYKDVELLLH LLASAERVGQ KKFDSAKDFL  240
SMCDKLSSKN GNLVQRLVYY FSEALRDKVD WQTGEKTPEN FGKKQIEYLK EELTCPRKCI  300
LETHQNFPFL QVIEFASVQA VIEHVAEAKK IHIIDLDINH GMQWTILMQA LAAARHAESS  360
IENLKISALV IKSGPLIEET GKQLTSFADS LKLPFSFKTV KVQDILEVNE QSFEVEEDEA  420
LAVYGLFFFM TMISKQDRLE HLMRVMRTIR PRVMVITEVE ANHNSPVFVN RFTESLFFYS  480
AFLDSLEHFL KHDEYIRANL EREQLSRRIR NIVAAEGEER VIRHVSMNVW RAFFARFGMK  540
EVEMSMSSVL QANLVFNNFP YGKYCTLDND GKSMIIGWKR TPLFSVSAWK LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3722558927378Protein SCARECROW
5b3h_A4e-3722558926377Protein SCARECROW
5b3h_D4e-3722558926377Protein SCARECROW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174205.10.0PREDICTED: DELLA protein RGL1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.18e-55RGA-like 2