PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000287.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 285aa    MW: 32178.6 Da    PI: 8.3128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000287.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.9e-171462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W+++Ed +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
  Itr_sc000287.1_g00007.1 14 KGPWSPDEDAKLKAYIHQHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62
                             79*********************************************97 PP
2Myb_DNA-binding37.94.2e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +T eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Itr_sc000287.1_g00007.1  69 GEFTREEDNIICALYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.89962IPR017930Myb domain
SuperFamilySSF466894.49E-2611109IPR009057Homeodomain-like
SMARTSM007171.1E-121364IPR001005SANT/Myb domain
PfamPF002491.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-241569IPR009057Homeodomain-like
CDDcd001674.62E-101662No hitNo description
PROSITE profilePS5129422.00663117IPR017930Myb domain
SMARTSM007172.7E-1167115IPR001005SANT/Myb domain
PfamPF002492.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2370117IPR009057Homeodomain-like
CDDcd001673.39E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPD EDAKLKAYIH QHGTGGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTREEDNIIC ALYLSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGV  120
KQRRDHTVEM MSSKEREKLQ ADQTAMMNVC PPPVAFPAPE ILCEYPMYTT MGCITNSYSS  180
SFATNNNYSP VFMSDVIATN DVFRQAFNFP TTELNHHDFL YGYNSPQQLA DRYSSTITSG  240
SSSEGTSGSW EDISSLVYPP PKMVSTNHHL DEICPPTMFS NPNLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182453.11e-178PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y97e-77RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A067GTR93e-84A0A067GTR9_CITSI; Uncharacterized protein
STRINGXP_006466578.14e-85(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-78myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]