PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000285.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 216aa MW: 24176.2 Da PI: 5.8313 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.3 | 3.2e-07 | 6 | 37 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+W++eEd +l+ +++ +G +W+ ++ g Itr_sc000285.1_g00019.1 6 RGAWSPEEDTKLISYIRNHGIWNWTQMPKFAG 37 89******************999999998887 PP | |||||||
2 | Myb_DNA-binding | 31.4 | 4.5e-10 | 69 | 108 | 7 | 48 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 eE e++++ + +G++ W++ a+ ++ gR+++++k++++++l Itr_sc000285.1_g00019.1 69 EEVEIIIKMYESMGNR-WSAMAAQLP-GRSDNEIKNFFHTHL 108 999*************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-9 | 2 | 35 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-13 | 4 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 11 | 5 | 42 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-5 | 6 | 38 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.958 | 61 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-6 | 65 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-17 | 69 | 109 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-8 | 69 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.07E-8 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAEVKRGAWS PEEDTKLISY IRNHGIWNWT QMPKFAGTLI IPWGSLVVVH EPLINVIVNW 60 LIICNGCREE VEIIIKMYES MGNRWSAMAA QLPGRSDNEI KNFFHTHLKK HLRRQEPKHA 120 ATDHHRISKA DNTTSDDAKI NIIADDCKLL GSSSSSVVIL ESSRSCSSSR VVENNDGSSG 180 GNNGTAVVAP PFSSDTDDDV NGFWYDVLME AEYLNF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019191854.1 | 2e-96 | PREDICTED: myb-related protein Myb4-like | ||||
STRING | XP_009594711.1 | 4e-34 | (Nicotiana tomentosiformis) | ||||
STRING | PGSC0003DMT400051513 | 3e-34 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 7e-28 | myb domain protein 15 |