PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000284.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 172aa MW: 19465.1 Da PI: 7.2675 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00042 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F r L H+++H Itr_sc000284.1_g00002.1 73 HVCTVCGLEFERGQALGGHMSKH 95 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.18E-7 | 38 | 95 | No hit | No description |
Pfam | PF13912 | 2.2E-10 | 39 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.56 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.076 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.7E-4 | 69 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.27 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.12 | 73 | 103 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-9 | 73 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MAVLKRSNRD DDVESLAMAN CVMLISRMDE EQIAMSGRVY ECKTCRKKFH SFQALGGHRA 60 SHKRPRMSSE KKHVCTVCGL EFERGQALGG HMSKHRTHAQ PLPLPAQQHN NIIKSADNLY 120 SDSKVVVKEQ QEEKEEDSSP DSIKVVVSWD LNLTPHENET TELILAAEIR LN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019199464.1 | 4e-85 | PREDICTED: zinc finger protein ZAT12-like | ||||
TrEMBL | A0A328DP78 | 9e-43 | A0A328DP78_9ASTE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 4e-28 | C2H2 family protein |