PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000281.1_g00019.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 389aa MW: 42244.2 Da PI: 8.1805

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000281.1_g00019.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	149	172	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ F +L++H+ H Itr_sc000281.1_g00019.1 149 YPCTLCGEIFLAANLLEQHQFIkH 172 99*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.432	149	177	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	151	172	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	8.73E-14	174	388	No hit	No description
Gene3D	G3DSA:3.90.228.10	9.7E-10	184	388	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MAKPTSLRPL FSTFLSLLGL LLLHLGCFFF SSSAAAVADH DRPEPPRQNS GRNRKSSSSS 60 SRLKRSTAGA VSASWSFVKR IFSCAAAAGG GGGGTPPPHP SIPSPCSSSR SLTKPIVIPL 120 ASPEKLSSDP LSGDICSDQP NIPLRNNIYP CTLCGEIFLA ANLLEQHQFI KHAVSELVDG 180 DSGNNIVQII FKTGWPDTAK NPAIRRILKI HNSPKILARF EEYREHVKSK AARNVAGRRR 240 DERCIADGNE LLRFHCATFL CDLGENGGCA TSGICSNQYC SVCGIIKTGF SPKMDGISTQ 300 SSGWRAHAAV PEEIEEEFKF MHVKRAMLVC RVIAGRVGSD PDVVDKDDPG FDSLVGRENG 360 AHPRLDEEEE LWVFNPRAVL PCFVIVYNV

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MAKPTSLRPL FSTFLSLLGL LLLHLGCFFF SSSAAAVADH DRPEPPRQNS GRNRKSSSSS  60
SRLKRSTAGA VSASWSFVKR IFSCAAAAGG GGGGTPPPHP SIPSPCSSSR SLTKPIVIPL  120
ASPEKLSSDP LSGDICSDQP NIPLRNNIYP CTLCGEIFLA ANLLEQHQFI KHAVSELVDG  180
DSGNNIVQII FKTGWPDTAK NPAIRRILKI HNSPKILARF EEYREHVKSK AARNVAGRRR  240
DERCIADGNE LLRFHCATFL CDLGENGGCA TSGICSNQYC SVCGIIKTGF SPKMDGISTQ  300
SSGWRAHAAV PEEIEEEFKF MHVKRAMLVC RVIAGRVGSD PDVVDKDDPG FDSLVGRENG  360
AHPRLDEEEE LWVFNPRAVL PCFVIVYNV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178226.1	0.0	PREDICTED: uncharacterized protein LOC109173449
TrEMBL	A0A1S4BRD7	1e-168	A0A1S4BRD7_TOBAC; uncharacterized protein LOC107811098
TrEMBL	A0A1U7W3C2	1e-168	A0A1U7W3C2_NICSY; uncharacterized protein LOC104223368
STRING	XP_009773098.1	1e-169	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11834	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-100	C2H2 family protein