PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000271.1_g00104.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27145.5 Da PI: 8.1208 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++G ++W++ +r g+ R++k+c++rw +yl Itr_sc000271.1_g00104.1 14 KGPWTPEEDQILTSFIQRYGHENWRALPRQAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 4e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+e ++++++ lG++ W++Ia++++ gRt++++k++++++l Itr_sc000271.1_g00104.1 67 RGNFSKDEEETIIQLHQTLGNR-WSAIASRLP-GRTDNEIKNFYNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.155 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.21E-30 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.368 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-27 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.42E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MVRAPCCEKM GMKKGPWTPE EDQILTSFIQ RYGHENWRAL PRQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SKDEEETIIQ LHQTLGNRWS AIASRLPGRT DNEIKNFYNT HLKKRLQHHG 120 SPYYSPNNVV GNITPIQIGD SSIHLRFPAP MTVNCNSVGR QNSTYSISSP MTTKMEEEES 180 MQESYQNYLG TTSNDDSGIV YLPSSSSVLP MELGGCETSS SISNDAVFWY NLLINAGNTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 14 | 116 | 7 | 108 | B-MYB |
1gv2_A | 5e-28 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-28 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-28 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019191836.1 | 1e-151 | PREDICTED: transcription repressor MYB6-like | ||||
TrEMBL | A0A068TX92 | 2e-81 | A0A068TX92_COFCA; Uncharacterized protein | ||||
STRING | XP_009606766.1 | 4e-83 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-72 | myb domain protein 15 |