PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000270.1_g00054.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 673aa MW: 75371.2 Da PI: 6.6892

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000270.1_g00054.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00013	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C + F ++ n++rH+r+H Itr_sc000270.1_g00054.1 77 KCVKCFREFCSPVNYRRHMRLH 98 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.538	76	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MSVAKFGTLG TPDATRSDEG NNSLDTFIRQ AIGKEPLLSF SRTGDSPVQL IQLLHALDQP 60 DLPGWPLLTP LKVQMQKCVK CFREFCSPVN YRRHMRLHRR SLNFDKESRK YRGLLGAFWD 120 KLTLEEVKKV ASLNDVSLKE IPGTSLVNGL SMSICKAMVW TLPSVYVKAG SALLEIIQAK 180 PCRLPLSSLE LFSILDDASE RTFLCAGTAE AVQKYVFDGE VAKVGLDLKN LIACTCFLFE 240 QKLVKAWLVD KDAEALRCQK LLVEEEEAAQ RRYDFIGHMK AELLEIKRQK KLRQKEQKAR 300 DQTNEEKVDI FVMADSLDDP LMAGVSSPPA SSDSNSSSNL DVSVDDSCLE MVHLNKDQDV 360 EAQKLFNENF EMAVQNVEPQ LVLAKSQEQL ANSQWQVQKP QRPGRNGFYG SQNHQDLKVE 420 PVQKHGPPSV RGPVIDGKIW TRKVRPENNE SLRQVSQKTA ISENHSDCEV MIGLISVPVK 480 NCTQHQHGNN LEEAQDDSGN KQDSEPKKHN IPENQNKNVH SKYTTNRPAN KHWRPVSRHD 540 GGRQDQEDGV LVKVDDQTLS SEKFQQSHSM VNGNNKNHSC LPPEGNTHSE GLPLCSSVAK 600 AFLAQRWKEA ISADHVKLVL SPAPEAQCDT LEATSPSVNQ EAFCGLDLQS SSLNRFEQQR 660 FRFISDLLSG NEA

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MSVAKFGTLG TPDATRSDEG NNSLDTFIRQ AIGKEPLLSF SRTGDSPVQL IQLLHALDQP  60
DLPGWPLLTP LKVQMQKCVK CFREFCSPVN YRRHMRLHRR SLNFDKESRK YRGLLGAFWD  120
KLTLEEVKKV ASLNDVSLKE IPGTSLVNGL SMSICKAMVW TLPSVYVKAG SALLEIIQAK  180
PCRLPLSSLE LFSILDDASE RTFLCAGTAE AVQKYVFDGE VAKVGLDLKN LIACTCFLFE  240
QKLVKAWLVD KDAEALRCQK LLVEEEEAAQ RRYDFIGHMK AELLEIKRQK KLRQKEQKAR  300
DQTNEEKVDI FVMADSLDDP LMAGVSSPPA SSDSNSSSNL DVSVDDSCLE MVHLNKDQDV  360
EAQKLFNENF EMAVQNVEPQ LVLAKSQEQL ANSQWQVQKP QRPGRNGFYG SQNHQDLKVE  420
PVQKHGPPSV RGPVIDGKIW TRKVRPENNE SLRQVSQKTA ISENHSDCEV MIGLISVPVK  480
NCTQHQHGNN LEEAQDDSGN KQDSEPKKHN IPENQNKNVH SKYTTNRPAN KHWRPVSRHD  540
GGRQDQEDGV LVKVDDQTLS SEKFQQSHSM VNGNNKNHSC LPPEGNTHSE GLPLCSSVAK  600
AFLAQRWKEA ISADHVKLVL SPAPEAQCDT LEATSPSVNQ EAFCGLDLQS SSLNRFEQQR  660
FRFISDLLSG NEA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019149730.1	0.0	PREDICTED: uncharacterized protein LOC109146521
Refseq	XP_019149731.1	0.0	PREDICTED: uncharacterized protein LOC109146521
Refseq	XP_019149732.1	0.0	PREDICTED: uncharacterized protein LOC109146521
TrEMBL	A0A484KLR9	0.0	A0A484KLR9_9ASTE; Uncharacterized protein
STRING	XP_009589941.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3722	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-115	C2H2-like zinc finger protein