PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000270.1_g00039.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 273aa    MW: 30323.3 Da    PI: 10.1171
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000270.1_g00039.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-114185147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             r +WT+ E++++++a +++  + Wk+I + +   +t  q++s+ qky
  Itr_sc000270.1_g00039.1 41 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVA-SKTVIQIRSHAQKY 85
                             789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-153591IPR009057Homeodomain-like
PROSITE profilePS5129414.0473690IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-63893IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-183988IPR006447Myb domain, plants
SMARTSM007171.6E-94088IPR001005SANT/Myb domain
PfamPF002496.8E-94185IPR001005SANT/Myb domain
CDDcd001673.27E-74386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MALQNSGSFS KQTPAAAANS NAPPDDPTKK VRKPYTITKS RESWTEPEHD KFLEALQLFD  60
RDWKKIEAFV ASKTVIQIRS HAQKYFQKVQ KSGANEHLPP PRPKRKAAHP YPQKASRSGA  120
SQVPTSVQGP AALPDAEMAR KPGFLPIIPA TSASLPSRTD NAMQAGDLES TDRPLTDTHC  180
WSSNKNSSAE LTNKRAHGNS LRVLPDFNEV YNFIGSIFDP NVSGHLQKLK KMDRIDVETV  240
LLLMRNLTIN LMSPDFENHK KLLSSSEVDG REV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019149685.10.0PREDICTED: protein REVEILLE 6-like isoform X4
SwissprotQ8H0W36e-96RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1J6K0C61e-118A0A1J6K0C6_NICAT; Protein reveille 6
STRINGXP_009802901.11e-117(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.15e-84MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]