PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000269.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 360aa    MW: 39179.3 Da    PI: 4.7987
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000269.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.5e-36291202102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k++++++d++++++isw+e+g+sf+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+
  Itr_sc000269.1_g00015.1  29 FLTKTFQLVDDQSIDDVISWNEDGSSFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFR 105
                              9*****************************************************************99.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              kg+k+ll++i+r+k 
  Itr_sc000269.1_g00015.1 106 KGEKRLLCDIQRRKV 120
                              ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5825118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.17E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3229118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAPPLPPVER NGGETTAGGE AQRSVPTPFL TKTFQLVDDQ SIDDVISWNE DGSSFIVWNP  60
TEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFS NDCFRKGEKR LLCDIQRRKV  120
AAQAVAVPSA AVTAVPVTVT ATAVVAVPAQ PQKTVSPSNS GEEQVVSSNS SPGTAAMDTS  180
QGGSTAELIG ENERLRKENI ELNKELSQMK SLCSNIYVLM SNYSGSNANS SNQSAESSLQ  240
SLKPLDLMPA AAGCGGENQP DPEETRARLF GVSIGSKRVR EGEDGSAEQD HDLRLQQPGT  300
DVKSEPSDPE NGEDNEESPW LRQCHRQNQR GPCTRRGTCE NESRVSANLC LCGGHFPEAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-2581187129Heat shock factor protein 1
5d5v_B6e-2581187129Heat shock factor protein 1
5d5v_D6e-2581187129Heat shock factor protein 1
5hdg_A5e-252911810110Heat shock factor protein 1
5hdn_A5e-252911810110Heat shock factor protein 1
5hdn_B5e-252911810110Heat shock factor protein 1
5hdn_C5e-252911810110Heat shock factor protein 1
5hdn_D5e-252911810110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019200488.10.0PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW43e-96HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A484LM531e-150A0A484LM53_9ASTE; Uncharacterized protein
STRINGXP_009603015.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.19e-87heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]