PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000264.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 622aa    MW: 68428 Da    PI: 6.1606
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000264.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.22.7e-5291451128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lp GfrF+Ptd+el+++yL++k++g++ e+ +vi+evd++k+ePwdLp  + +k+++ ew+fF++ d+ky++g+r nrat++gyWk
  Itr_sc000264.1_g00005.1   9 LPLGFRFRPTDQELISHYLRRKINGRHSEV-QVIPEVDVCKWEPWDLPslSVIKTDDPEWFFFCPLDRKYPNGTRCNRATEAGYWK 93 
                              699************************999.99***************6447888889**************************** PP

                      NAM  85 atgkdkevlsk..kgel........vglkktLvfykgrapkgektdWvmheyrl 128
                              atgkd++++++  +           +g+kktLvfykgrapkge+t+W+mheyr+
  Itr_sc000264.1_g00005.1  94 ATGKDRAIKTRksT--GsdqsniplIGIKKTLVFYKGRAPKGERTNWIMHEYRA 145
                              *********98551..245567888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-595168IPR003441NAC domain
PROSITE profilePS5100556.29168IPR003441NAC domain
PfamPF023653.2E-2710144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MSGVSMDALP LGFRFRPTDQ ELISHYLRRK INGRHSEVQV IPEVDVCKWE PWDLPSLSVI  60
KTDDPEWFFF CPLDRKYPNG TRCNRATEAG YWKATGKDRA IKTRKSTGSD QSNIPLIGIK  120
KTLVFYKGRA PKGERTNWIM HEYRATEPDL DGTHPGQGAF VLCRLFHKSD DKKCDEAEPS  180
GSSPATNKSS PDDVSSNLFQ EAALLDRQPE KANASSIVML PVESRMSDAV EHSTEEIKNE  240
APVGVDMVFN ESKHESDSCT DIGLHISSPF PDDFGNDHNG LDFQDGTCEQ DVSLSELLGH  300
FQGHENYSSE ETTCQNNLSS ERLILQDTLL EQASPVPFQT QVPPNDPDSI LHTDDTHTHT  360
NPVGHASDVA GGSGLRIRTR KRQNRPTSGN IITRGTAPRR IHLSLEQEPI SVSSANVAEA  420
GSFGSEVHEV QSLVAEVQAS PISFKTKASE ESYGDNSATN HRTTVDRETG TKVWMPQLFK  480
QASSEHNVSQ VSAAKRILQM EQVTVSASSG KAGIGHGRRA VIGEAHEGKE CTSSTDEGEM  540
PSSSTGSRET TQEHDTTVRV LSKQGSNHHL SKIGFSFSSL VSPVLCGLSF SRLYAVSIYV  600
IVAVSIFCVM IWKYPSKSVV QR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-46816819168NAC domain-containing protein 19
3swm_B1e-46816819168NAC domain-containing protein 19
3swm_C1e-46816819168NAC domain-containing protein 19
3swm_D1e-46816819168NAC domain-containing protein 19
3swp_A1e-46816819168NAC domain-containing protein 19
3swp_B1e-46816819168NAC domain-containing protein 19
3swp_C1e-46816819168NAC domain-containing protein 19
3swp_D1e-46816819168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170291.10.0PREDICTED: protein NTM1-like 9 isoform X2
TrEMBLA0A068UVE11e-138A0A068UVE1_COFCA; Uncharacterized protein
STRINGMigut.A01059.1.p1e-139(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14316710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-119NAC transcription factor-like 9