PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000256.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 346aa    MW: 39064.3 Da    PI: 8.1804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000256.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05178197120
                              EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                              + C++C+k+F+r  n++ H+
  Itr_sc000256.1_g00009.1 178 FACNICSKTFNRYNNMQMHM 197
                              78*****************9 PP
2zf-C2H2171.6e-05262284123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C +Cgk+F  k + ++H +++
  Itr_sc000256.1_g00009.1 262 FTCRKCGKTFAVKGDWRTHEKNC 284
                              89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.95E-5169201No hitNo description
Gene3DG3DSA:3.30.160.603.7E-5178197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.0E-4178197IPR007087Zinc finger, C2H2
SMARTSM003550.2178200IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429178205IPR007087Zinc finger, C2H2
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-5248282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.9E-6248282No hitNo description
PROSITE profilePS501578.808262282IPR007087Zinc finger, C2H2
SMARTSM0035527262282IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGIRNCHIQA GLNNLCFQAP TFIEWLKPSS IPSSSSPSSS ISPQLLLIHQ SSGNNKDTMN  60
FLKFPALETQ ERVDDNNHEE TLQCLPLLSK LMEAKGGGVK EEERDEEEEK VAVGLQIGLP  120
DSGEEAKPFN VFKAAEEEGV KKKRRAVVVD GDNGCNFNTE SRFWIPTPTQ ILVGPMQFAC  180
NICSKTFNRY NNMQMHMWGH GSEFRKGPES LRGTQPAAML RLPCYCCSPG CKNNINHPRA  240
KPLKDFRTLQ THYKRKHGSK PFTCRKCGKT FAVKGDWRTH EKNCGKLWYC TCGSDFKHKR  300
SLKDHIRSFG KGHSPHPSLE GFEDEKEEFM TDEDETVSKS GNSYLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140144KKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199011.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-125ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A068VJJ31e-148A0A068VJJ3_COFCA; Uncharacterized protein
TrEMBLB9HQX31e-148B9HQX3_POPTR; C2H2 family protein
STRINGPOPTR_0009s14590.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-119WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]