PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000255.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 650aa    MW: 71408.7 Da    PI: 6.7326
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000255.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.71e-3063147187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW++qe+laL+++r++m+  +r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+ ++   + +t+++fdqle
  Itr_sc000255.1_g00016.1  63 RWPRQETLALLKIRSDMDVVFRDSSLKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKDGRASK--ADGKTYRFFDQLE 146
                              8********************************************************************96..66678*******8 PP

                 trihelix  87 a 87 
                              a
  Itr_sc000255.1_g00016.1 147 A 147
                              5 PP
2trihelix1041.1e-32465549186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+k ev+aLi++r++++++++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ l+
  Itr_sc000255.1_g00016.1 465 RWPKTEVQALIRLRTNLDTKYQENGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHLLD 549
                              8*********************************************************************8.99*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9856120IPR017877Myb-like domain
SMARTSM007170.006260122IPR001005SANT/Myb domain
CDDcd122031.63E-2662127No hitNo description
PfamPF138379.9E-2062147No hitNo description
SMARTSM007170.0015462524IPR001005SANT/Myb domain
PROSITE profilePS500907.306464522IPR017877Myb-like domain
CDDcd122034.23E-30464529No hitNo description
Gene3DG3DSA:1.10.10.602.2E-4464521IPR009057Homeodomain-like
PfamPF138372.1E-22464551No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MLGVSGLISA AADGAATATA PPGEAPESGG AGSAAGGPES GAAAGGYGEE DKAEAERNSG  60
GNRWPRQETL ALLKIRSDMD VVFRDSSLKG PLWEEVSRKM AELGYHRSSK KCKEKFENVY  120
KYHKRTKDGR ASKADGKTYR FFDQLEAFEH TTPSHALPPP PRPQPPPLPP AAPMVAPPLP  180
GNNNNNNAST TNVVVAANPP VQVPAQVTVP STQNPFGAGV HNPINAPVFP PSSQTRSLSL  240
PPPQAAANTG GFPSQRNVPG SPLSDSTSSS TSSDEDIQRR HRRKRKWKDF FERLMKDVIE  300
KQEDLQKKFL EALEKRERDR MVREEAWRVQ EMARMNREHD LLVQERSMAA AKDAAVLQFL  360
QKVSEQHNLQ IPITNATPAA AQIQIQLPES LSTPTQQPQP PPPPIPPHSQ QPPPQGPEPI  420
SVAPPATMPF TISTPTPPVP TKILDVSKPP DNNAIESFTP ASSSRWPKTE VQALIRLRTN  480
LDTKYQENGP KGPLWEEISA GMRKLGYNRN AKRCKEKWEN INKYFKKVKE SNKKRPEDSK  540
TCPYFHLLDA IYKERAKNEA SFNPPGSALK PENNPMVPIM VQPEQQWPLP PDHHHHHALN  600
DHESDNIDED DGDDDDDDED DEGGGAYEIV TNKPPSTTTT TTTTTATSTV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175245.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A328DUP00.0A0A328DUP0_9ASTE; Uncharacterized protein
STRINGXP_009618661.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-83Trihelix family protein