PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000253.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 326aa    MW: 36446.9 Da    PI: 7.0406
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000253.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.42.4e-4371061100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk++rrkC+++Cv+apyfp +qp+kfan+hk+FGasnv+kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lqq+
  Itr_sc000253.1_g00009.1   7 PCAACKLQRRKCTQECVFAPYFPPDQPQKFANIHKVFGASNVSKLLNELNASQREDAVNSLAYEAEYRLRDPVYGCVGLISLLQQR 92 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              l+q++ +l+++k+e
  Itr_sc000253.1_g00009.1  93 LKQVQRDLNTAKRE 106
                              *********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7196107IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-427104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSSSSSPCAA CKLQRRKCTQ ECVFAPYFPP DQPQKFANIH KVFGASNVSK LLNELNASQR  60
EDAVNSLAYE AEYRLRDPVY GCVGLISLLQ QRLKQVQRDL NTAKRELANY IGPNAALAPF  120
IQQAGFMQHP NHPSSSGVMQ YNMQPMMMGL PTGIPHSNQL IIRDHQQIHP HPHPQQQQQQ  180
LIESHQLMIG EADLIGSYEQ QHQNPHQFDL MRFNGFESGG GGPVTATGFH QMNTAPAAIS  240
PSLALGAYDN PYPIQQPSQP EHCHPHPHHH DHDQIQLQPQ LLLQQQQPQQ LQIQQQQPPP  300
QPETPQQQQQ RAKSDEGGGR SVGPLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4741108114LOB family transfactor Ramosa2.1
5ly0_B2e-4741108114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1716800.0GU171680.1 Ipomoea batatas microsatellite Stv_Ipb_512 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185193.11e-153PREDICTED: LOB domain-containing protein 36
SwissprotQ9FKZ31e-72LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A1J6K9Q51e-101A0A1J6K9Q5_NICAT; Lob domain-containing protein 36
STRINGXP_009774046.11e-101(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.16e-74ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]